[Debian-med-packaging] Bug#899129: [dom at earth.li: Bug#899129: prime-phylo: FTBFS: cd obj-x86_64-linux-gnu && make -j8 -Oline returned exit code 2]

[Erik Sjölund]

Hi Andreas,

I think the future for prime-phylo (C++) does not look that good.
No development has happened for many years as the project was abandoned
for a Java implementation.
https://github.com/arvestad/jprime

Although I maintained the web site
http://prime.sbc.su.se
before, now the DNS has changed to point to another web server
where I don't have any log in permission.

I CC Lars Arvestad (the owner of the project), if there is anything he
wants to add.

Best regards,
Erik








On Sun, May 20, 2018 at 6:31 AM, Andreas Tille <andreas at fam-tille.de> wrote:
> Hi Erik,
>
> besides this issue (and others that where solved inside Debian
> meanwhile) I realised that the download location of PrIME has vanished.
>
> Could you please check this?
>
> Kind regards
>
>        Andreas.
>
> ----- Forwarded message from Dominic Hargreaves <dom at earth.li> -----
>
> Date: Sat, 19 May 2018 18:01:53 +0200
> From: Dominic Hargreaves <dom at earth.li>
> To: submit at bugs.debian.org
> Subject: Bug#899129: prime-phylo: FTBFS: cd obj-x86_64-linux-gnu && make -j8 -Oline returned exit code 2
> X-Debian-PR-Message: report 899129
> X-Debian-PR-Package: src:prime-phylo
> X-Debian-PR-Keywords:
> X-Debian-PR-Source: prime-phylo
>
> Source: prime-phylo
> Version: 1.0.11-4
> Severity: serious
> Justification: FTBFS
> User: debian-perl at lists.debian.org
> Usertags: hh2018
>
> When testing packages against the upcoming release of perl, we found
> an unrelated FTBFS on a clean sid chroot:
>
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++  -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC   -std=gnu++98 -o CMakeFiles/prime-phylo.dir/TreeIO.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeIO.cc
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
> make[2]: *** [CMakeFiles/Makefile2:137: src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/all] Error 2
> make[1]: *** [Makefile:155: all] Error 2
> dh_auto_build: cd obj-x86_64-linux-gnu && make -j8 -Oline returned exit code 2
> make: *** [debian/rules:10: build] Error 25
>
> _______________________________________________
> Debian-med-packaging mailing list
> Debian-med-packaging at alioth-lists.debian.net
> https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-packaging
>
> ----- End forwarded message -----
>
> --
> http://fam-tille.de