[Debian-med-packaging] Bug#842815: Help needed for HDF5 1.10 transition of libsis-jhdf5-java

[Gilles Filippini]

Hi,

Andreas Tille a écrit le 28/05/2018 à 11:29 :
> Hi folks from Debian Science,
> 
> is there anybody out there who can help with some HDF5 1.10 transition?
> 
> I admit I have no experience with HDF5 neither with Java - but the
> migration would help a lot.
> 
> Kind regards
> 
>        Andreas.

As already stated in this thread [1] I think patching libsis-jhdf5-java
is a huge task beyond my available time.

[1] https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=842815#55

> On Mon, May 28, 2018 at 09:18:28AM +0200, Bernd Rinn wrote:
>> Hello Andreas,
>>
>> On 05/27/2018 07:12 AM, Andreas Tille wrote:
>>> Hello Bernd,
>>>
>>> sorry for nagging again but we now have another Dependency from
>>> sis-jhdf5 which makes a fix for this issue even more interesting.  As I

Have you considered using libhdf5-java or libjhdf5-java instead?

_g.

>>> said before I would also try a patch if you might hesitate to issue a
>>> completely new release.
>>
>> It is embarrassing to admit that I still haven't found the time to port
>> JHDF5 to HDF5 1.10.
>>
>> If you can come up with a patch to bridge to time that would be greatly
>> appreciated!
>>
>> Kind regards,
>> Bernd
>>      Andreas.
>>>
>>> On Wed, Sep 06, 2017 at 12:50:56PM +0200, Andreas Tille wrote:
>>>> Hello Bernd,
>>>>
>>>> On Wed, 23 Nov 2016 06:54:21 +0100, you wrote
>>>>> the migration of JHDF5 to HDF5 1.10 is ongoing and mostly depend on me
>>>>> having a block of time I can spend on it. Your analysis of the work that
>>>>> needs to be done is right from what I can see. The plan is to switch to
>>>>> using the JNI library from the HDF group wherever possible (it may still
>>>>> be necessary to have a small JNI library though as some calls appear to
>>>>> be missing).
>>>>>
>>>>> I will keep you updated.
>>>>
>>>> Is there any news, may be only a patch for the existing version we
>>>> could try to fix the Debian package?
>>>>
>>>> Kind regards
>>>>
>>>>        Andreas.
>>>>
>>>> -- 
>>>> http://fam-tille.de
>>>>
>>>> _______________________________________________
>>>> Debian-med-packaging mailing list
>>>> Debian-med-packaging at lists.alioth.debian.org
>>>> http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging
>>>>
>>>
>>
>> -- 
>> Dr. Bernd Rinn
>> Head Scientific IT Services
>> ETH Zurich IT Services
>> SIB Swiss Institute of Bioinformatics
>> Weinbergstr. 11 (WEC D 19), 8092 Zürich, Switzerland, +41 44 632 0608
>> Mattenstr. 26 (BSB 1.01), 4058 Basel, Switzerland, +41 61 387 3130
>>
> 
> 
> 


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