[Debian-med-packaging] Bug#900394: ITP: seqmagick -- imagemagick-like frontend to Biopython SeqIO
Andreas Tille
tille at debian.org
Wed May 30 08:32:47 BST 2018
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille at debian.org>
* Package name : seqmagick
Version : 0.7.0
Upstream Author : Matsen Group
* URL : https://github.com/fhcrc/seqmagick/
* License : GPL-3+
Programming Lang: Python
Description : imagemagick-like frontend to Biopython SeqIO
Seqmagick is a little utility to expose the file format conversion
in BioPython in a convenient way.
.
Features include:
.
* Modifying sequences:
- Remove gaps
- Reverse & reverse complement
- Trim to a range of residues
- Change case
- Sort by length or ID
* Displaying information about sequence files
* Subsetting sequence files by:
- Position
- ID
- Deduplication
* Filtering sequences by quality score
* Trimming alignments to a region of interest defined by the forward
and reverse primers
Remark: This package is maintained by Debian Med Packaging Team at
https://salsa.debian.org/med-team/seqmagick
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