[Debian-med-packaging] Bug#912586: python-cobra still fails it's autopkg tests

[Matthias Klose]

Package: src:python-cobra
Version: 0.13.4-2
Severity: important
Tags: sid buster

Even after the dependency fix, the autopkg tests fail with:

=========================== short test summary info ============================
SKIP [2] ../../../usr/lib/python3/dist-packages/cobra/test/test_io.py:200:
condition: not libsbml
SKIP [2] ../../../usr/lib/python3/dist-packages/cobra/test/test_io.py:206:
condition: not libsbml
SKIP [2] ../../../usr/lib/python3/dist-packages/cobra/test/test_io.py:212:
condition: not libsbml
SKIP [2] ../../../usr/lib/python3/dist-packages/cobra/test/test_io.py:218:
condition: not libsbml
SKIP [1] ../../../usr/lib/python3/dist-packages/cobra/test/test_io.py:200:
condition: not cPickle
SKIP [1] ../../../usr/lib/python3/dist-packages/cobra/test/test_io.py:206:
condition: not cPickle
SKIP [1] ../../../usr/lib/python3/dist-packages/cobra/test/test_io.py:212:
condition: not cPickle
SKIP [1] ../../../usr/lib/python3/dist-packages/cobra/test/test_io.py:218:
condition: not cPickle
SKIP [23] /usr/lib/python3/dist-packages/pytest_benchmark/plugin.py:389:
Benchmarks are skipped (--benchmark-skip was used).
SKIP [6] /usr/lib/python3/dist-packages/cobra/test/test_io.py:237: not implemented
SKIP [2] ../../../usr/lib/python3/dist-packages/cobra/test/test_io.py:233:
condition: not libsbml
SKIP [1] ../../../usr/lib/python3/dist-packages/cobra/test/test_io.py:233:
condition: not cPickle
SKIP [2] ../../../usr/lib/python3/dist-packages/cobra/test/test_io.py:241:
condition: not libsbml
SKIP [1] ../../../usr/lib/python3/dist-packages/cobra/test/test_io.py:241:
condition: not cPickle
SKIP [9] ../../../usr/lib/python3/dist-packages/cobra/test/test_io_order.py:73:
Order for legacy SBML I/O is uninteresting.
SKIP [9] ../../../usr/lib/python3/dist-packages/cobra/test/test_io_order.py:73:
Order for Matlab model I/O is uninteresting.
SKIP [1]
../../../usr/lib/python3/dist-packages/cobra/test/test_solver_model.py:35: no cplex
SKIP [1]
../../../usr/lib/python3/dist-packages/cobra/test/test_solver_model.py:51: no cplex
SKIP [1]
../../../usr/lib/python3/dist-packages/cobra/test/test_solver_model.py:760: need
cplex
SKIP [1]
../../../usr/lib/python3/dist-packages/cobra/test/test_solver_model.py:787: no cplex
SKIP [1]
../../../usr/lib/python3/dist-packages/cobra/test/test_solver_model.py:801: no cplex
SKIP [1]
../../../usr/lib/python3/dist-packages/cobra/test/test_solver_model.py:814: no cplex
SKIP [1]
../../../usr/lib/python3/dist-packages/cobra/test/test_solver_model.py:826: no cplex

=============================== warnings summary ===============================
cobra/test/test_medium.py::TestMinimalMedia::()::test_medium_alternative_mip
  cobra/medium/minimal_medium.py:217 FutureWarning: Sorting because
non-concatenation axis is not aligned. A future version
  of pandas will change to not sort by default.

  To accept the future behavior, pass 'sort=False'.

  To retain the current behavior and silence the warning, pass 'sort=True'.


-- Docs: http://doc.pytest.org/en/latest/warnings.html
== 226 passed, 72 skipped, 5 xfailed, 1 xpassed, 1 warnings in 39.82 seconds ===
make: *** [import sys
from cobra.test import test_all
sys.exit(0) if test_all() else sys.exit(1):9: py3-test] Error 1
autopkgtest [13:37:26]: test command1: -----------------------]
autopkgtest [13:37:26]: test command1:  - - - - - - - - - - results - - - - - -
- - - -
command1             FAIL non-zero exit status 2