[Debian-med-packaging] Bug#912643: biojava-live FTBFS with OpenJDK 11

Adrian Bunk bunk at debian.org
Fri Nov 2 08:08:49 GMT 2018


Source: biojava-live
Version: 1:1.7.1-7
Severity: serious
Tags: ftbfs

https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/biojava-live.html

...
compile-biojava:
    [javac] /build/1st/biojava-live-1.7.1/build.xml:246: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
    [javac] Using javac -source 1.5 is no longer supported, switching to 6
    [javac] Using javac -target 1.5 is no longer supported, switching to 6
    [javac] Compiling 1444 source files to /build/1st/biojava-live-1.7.1/ant-build/classes/biojava
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 6
    [javac] warning: [options] source value 6 is obsolete and will be removed in a future release
    [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release
    [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
    [javac] /build/1st/biojava-live-1.7.1/src/org/biojava/bio/proteomics/StructureTools.java:37: warning: as of release 9, '_' is a keyword, and may not be used as an identifier
    [javac]   private static final AtomicSymbol _;
    [javac]                                     ^
    [javac] /build/1st/biojava-live-1.7.1/src/org/biojava/bio/proteomics/StructureTools.java:53: warning: as of release 9, '_' is a keyword, and may not be used as an identifier
    [javac]       _ = (AtomicSymbol) sTok.parseToken(" ");
    [javac]       ^
    [javac] /build/1st/biojava-live-1.7.1/src/org/biojava/bio/proteomics/StructureTools.java:72: warning: as of release 9, '_' is a keyword, and may not be used as an identifier
    [javac]     return _;
    [javac]            ^
    [javac] /build/1st/biojava-live-1.7.1/src/org/biojava/bio/structure/PDBHeader.java:10: error: package com.sun.corba.se.spi.legacy.connection does not exist
    [javac] import com.sun.corba.se.spi.legacy.connection.GetEndPointInfoAgainException;
    [javac]                                              ^
    [javac] Note: Some input files use or override a deprecated API.
    [javac] Note: Recompile with -Xlint:deprecation for details.
    [javac] Note: Some input files use unchecked or unsafe operations.
    [javac] Note: Recompile with -Xlint:unchecked for details.
    [javac] 1 error
    [javac] 7 warnings



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