[Debian-med-packaging] Bug#912662: mapsembler2: mapsembler_extend not found

[Horacio Montenegro]

Package: mapsembler2
Version: 2.2.4+dfsg-2
Severity: important
Tags: patch

Dear Maintainer,

The run_mapsembler2_pipeline script fails because at line 198 it calls
mapsembler2_extend:

$PATH_TOOLS\mapsembler2_extend $extremities_filename $read_sets -t $t -k $k -c
$c -g $g -x $x -y $y -f $f -i $prefix_index -o $prefix_results

However, the package installs only mapsembler_extend. Packages 2.2.3 from
stable and 2.2.4 from testing are affected.

Symlinking mapsembler2_extend to mapsembler_extend seems to fix this issue.



-- System Information:
Debian Release: buster/sid
  APT prefers testing
  APT policy: (900, 'testing'), (500, 'oldstable'), (300, 'stable'), (100, 'unstable')
Architecture: amd64 (x86_64)

Kernel: Linux 4.18.0-2-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages mapsembler2 depends on:
ii  bc           1.07.1-2+b1
ii  libc6        2.27-6
ii  libgcc1      1:8.2.0-8
ii  libgomp1     8.2.0-8
ii  libhdf5-100  1.10.0-patch1+docs-4+b2
ii  libstdc++6   8.2.0-8
ii  zlib1g       1:1.2.11.dfsg-1

mapsembler2 recommends no packages.

mapsembler2 suggests no packages.

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