[Debian-med-packaging] Bug#895765: How to announce commons.io in gradle build

[Andreas Tille]

Hi,

igv upstream has switched the build system to gradle and provides
specific java9 gradle input file.  I probably did not found the most
elegant way to choose this[1] but it should at least work.  I wonder
how I should announce common classes that are not found in

...
Compiling with JDK Java compiler API.
/build/igv-2.4.14+dfsg/src/main/java9/module-info.java:96: error: module not found: com.google.common
    requires com.google.common;
                       ^
/build/igv-2.4.14+dfsg/src/main/java9/module-info.java:97: error: module not found: commons.io
    requires commons.io;
                    ^
/build/igv-2.4.14+dfsg/src/main/java9/module-info.java:98: error: module not found: commons.math
    requires commons.math;
                    ^
/build/igv-2.4.14+dfsg/src/main/java9/module-info.java:100: error: module not found: gson
    requires gson;
             ^
/build/igv-2.4.14+dfsg/src/main/java9/module-info.java:110: error: module not found: javafx.base
    requires javafx.base;
                   ^
/build/igv-2.4.14+dfsg/src/main/java9/module-info.java:111: error: module not found: javafx.controls
    requires javafx.controls;
                   ^
...

since I can not find these in the said *.gradle files and thus have no
idea how to replace the upstream delivered jar file by the Debian
packaged file.  The according Build-Depends are (hopefully) properly
set.

Kind regards

        Andreas.

[1] https://salsa.debian.org/med-team/igv/commit/1fd85b5d63a43613ee39f7915278e35787438aa2

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