[Debian-med-packaging] Bug#912388: rdp-alignment FTBFS with OpenJDK 11

[Andreas Tille]

Control: tags -1 help
                                                         
Hi,                                                     
                                                       
I'm afraid I need help for this bug from the Debian Java team.
                                                     
Kind regards                                        
                                                   
       Andreas. 

On Wed, Oct 31, 2018 at 04:59:12AM +0200, Adrian Bunk wrote:
> Source: rdp-alignment
> Version: 1.2.0-4
> Severity: serious
> Tags: ftbfs
> 
> https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/rdp-alignment.html
> 
> ...
>    debian/rules override_dh_auto_build
> make[1]: Entering directory '/build/1st/rdp-alignment-1.2.0'
> #Ant is over-complicating things.  Do it the easy way.
> jh_build rdp-alignment.jar src
> find src -name *.java -and -type f -print0 | xargs -s 512000 -0 /usr/lib/jvm/default-java/bin/javac -g -cp /usr/share/java/commons-cli.jar:/usr/share/java/commons-lang.jar:/usr/share/java/commons-io.jar:/usr/share/java/rdp-readseq.jar:debian/_jh_build.rdp-alignment -d debian/_jh_build.rdp-alignment -source 1.7 -target 1.7 -encoding ISO8859-1
> warning: [options] bootstrap class path not set in conjunction with -source 7
> src/edu/msu/cme/rdp/alignment/pairwise/ScoringMatrix.java:27: error: package javax.xml.bind.annotation does not exist
> import javax.xml.bind.annotation.XmlAccessType;
>                                 ^
> src/edu/msu/cme/rdp/alignment/pairwise/ScoringMatrix.java:28: error: package javax.xml.bind.annotation does not exist
> import javax.xml.bind.annotation.XmlAccessorType;
>                                 ^
> src/edu/msu/cme/rdp/alignment/pairwise/ScoringMatrix.java:34: error: cannot find symbol
> @XmlAccessorType(XmlAccessType.FIELD)
>  ^
>   symbol: class XmlAccessorType
> src/edu/msu/cme/rdp/alignment/pairwise/ScoringMatrix.java:34: error: cannot find symbol
> @XmlAccessorType(XmlAccessType.FIELD)
>                  ^
>   symbol: variable XmlAccessType
> Note: Some input files use or override a deprecated API.
> Note: Recompile with -Xlint:deprecation for details.
> Note: Some input files use unchecked or unsafe operations.
> Note: Recompile with -Xlint:unchecked for details.
> 4 errors
> 1 warning
> make[1]: *** [debian/rules:28: override_dh_auto_build] Error 123
> 
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