[Debian-med-packaging] Bug#906337: Any clue how to circumvent issues with MPI on autobuilders

Andreas Tille tille at debian.org
Fri Sep 14 13:48:57 BST 2018


Control: tags -1 pending

On Fri, Sep 14, 2018 at 10:33:28AM +0200, Johannes Ring wrote:
> 
> In debian/rules in dolfin, we use the following to allow test programs to
> run with OpenMPI:
> 
>   export OMPI_MCA_plm_rsh_agent=/bin/false
> 
> Maybe that will fix your problem.

This is set in bioperl-run.  Meanwhile I've found out that the issue is
caused by the phyml test and recently Graham added

    export OMPI_MCA_rmaps_base_oversubscribe=1

which here solved the problem as well.

Thanks for the hint anyway

      Andreas.

-- 
http://fam-tille.de



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