[Debian-med-packaging] Bug#909767: salmon FTBFS with spdlog 1:1.1.0-1

Adrian Bunk bunk at debian.org
Thu Sep 27 21:40:04 BST 2018


Source: salmon
Version: 0.7.2+ds1-3
Severity: serious
Tags: ftbfs

https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/salmon.html

...
In file included from /build/1st/salmon-0.7.2+ds1/include/HitManager.hpp:4,
                 from /build/1st/salmon-0.7.2+ds1/src/HitManager.cpp:1:
/build/1st/salmon-0.7.2+ds1/include/RapMapUtils.hpp: In function 'void rapmap::utils::writeSAMHeader(IndexT&, std::shared_ptr<spdlog::logger>)':
/build/1st/salmon-0.7.2+ds1/include/RapMapUtils.hpp:52:18: error: 'MemoryWriter' is not a member of 'fmt'
             fmt::MemoryWriter hd;
                  ^~~~~~~~~~~~
/build/1st/salmon-0.7.2+ds1/include/RapMapUtils.hpp:53:6: error: 'hd' was not declared in this scope
      hd.write("@HD\tVN:1.0\tSO:unknown\n");
      ^~
/build/1st/salmon-0.7.2+ds1/include/RapMapUtils.hpp: In function 'void rapmap::utils::writeSAMHeader(IndexT&, std::ostream&)':
/build/1st/salmon-0.7.2+ds1/include/RapMapUtils.hpp:72:18: error: 'MemoryWriter' is not a member of 'fmt'
             fmt::MemoryWriter hd;
                  ^~~~~~~~~~~~
/build/1st/salmon-0.7.2+ds1/include/RapMapUtils.hpp:73:6: error: 'hd' was not declared in this scope
      hd.write("@HD\tVN:1.0\tSO:unknown\n");
      ^~
/build/1st/salmon-0.7.2+ds1/include/RapMapUtils.hpp: At global scope:
/build/1st/salmon-0.7.2+ds1/include/RapMapUtils.hpp:91:43: error: expected template-name before '<' token
     class FixedBuffer : public fmt::Buffer<char> {
                                           ^
/build/1st/salmon-0.7.2+ds1/include/RapMapUtils.hpp:91:43: error: expected '{' before '<' token
/build/1st/salmon-0.7.2+ds1/include/RapMapUtils.hpp:91:43: error: expected unqualified-id before '<' token
/build/1st/salmon-0.7.2+ds1/include/RapMapUtils.hpp:102:44: error: expected class-name before '{' token
     class FixedWriter : public fmt::Writer {
                                            ^
/build/1st/salmon-0.7.2+ds1/include/RapMapUtils.hpp:104:25: error: field 'buffer_' has incomplete type 'rapmap::utils::FixedBuffer'
             FixedBuffer buffer_;
                         ^~~~~~~
/build/1st/salmon-0.7.2+ds1/include/RapMapUtils.hpp:91:11: note: forward declaration of 'class rapmap::utils::FixedBuffer'
     class FixedBuffer : public fmt::Buffer<char> {
           ^~~~~~~~~~~
/build/1st/salmon-0.7.2+ds1/include/RapMapUtils.hpp: In constructor 'rapmap::utils::FixedWriter::FixedWriter(char*, std::size_t)':
/build/1st/salmon-0.7.2+ds1/include/RapMapUtils.hpp:107:30: error: expected class-name before '(' token
                 : fmt::Writer(buffer_), buffer_(array, size) {}
                              ^
/build/1st/salmon-0.7.2+ds1/include/RapMapUtils.hpp:107:30: error: expected '{' before '(' token
...



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