[Debian-med-packaging] Bug#933750: paleomix: Port to Python3 needed

Andreas Tille tille at debian.org
Fri Aug 2 22:10:18 BST 2019


Package: paleomix
Severity: normal

The code needs to be ported to Python3.

-- System Information:
Debian Release: 10.0
  APT prefers testing
  APT policy: (501, 'testing'), (500, 'buildd-unstable'), (50, 'unstable'), (5, 'experimental'), (1, 'buildd-experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 4.19.0-5-amd64 (SMP w/4 CPU cores)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=de_DE.utf8, LC_CTYPE=de_DE.utf8 (charmap=UTF-8), LANGUAGE=de_DE:de (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages paleomix depends on:
pn  adapterremoval       <none>
ii  bcftools             1.9-1
ii  bedtools             2.27.1+dfsg-4
pn  bowtie2              <none>
ii  bwa                  0.7.17-3
pn  examl                <none>
ii  mafft                7.407-2
pn  mapdamage            <none>
ii  phylip               1:3.697+dfsg-1
pn  picard-tools         <none>
ii  python               2.7.16-1
pn  python-coverage      <none>
pn  python-flexmock      <none>
ii  python-pysam         0.15.2+ds-2
pn  python-setproctitle  <none>
ii  r-base-core          3.5.2-1
pn  radiant              <none>
ii  raxml                8.2.12+dfsg-1
ii  samtools             1.9-4

paleomix recommends no packages.

paleomix suggests no packages.



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