[Debian-med-packaging] Bug#943260: seqan: Python2 removal in sid/bullseye

[Andreas Tille]

Control: tags -1 help

Hi,

I tried to port seqan to Python3 ut it seems there are several test
failures.  I wonder whether we really need seqan since we have seqan2
and seqan3.  Everybody who is convinced that we need seqan is invited to
checkout Git and try to fix these issues.


52% tests passed, 46 tests failed out of 95

Total Test time (real) =   9.49 sec

The following tests FAILED:
          1 - test_demo_align_align (Failed)
          2 - test_demo_align_compute_alignment_stats (Failed)
          3 - test_demo_align_gaps_example (Failed)
          4 - test_demo_align_global_alignment_banded (Failed)
          5 - test_demo_align_global_alignment_unbanded (Failed)
          6 - test_demo_align_integrate_align (Failed)
          7 - test_demo_bam_io_bam_stream (Failed)
          8 - test_demo_find_finder_index (Failed)
          9 - test_demo_find_finder_online (Failed)
         10 - test_demo_graph_graph_algo_dijkstra (Failed)
         11 - test_demo_graph_algorithms_all_pairs_shortest_path (Failed)
         12 - test_demo_graph_algorithms_bellman_ford_algorithm (Failed)
         13 - test_demo_graph_algorithms_breadth_first_search (Failed)
         14 - test_demo_graph_algorithms_dag_shortest_path (Failed)
         15 - test_demo_graph_algorithms_depth_first_search (Failed)
         16 - test_demo_graph_algorithms_dijkstra (Failed)
         17 - test_demo_graph_algorithms_floyd_warshall_algorithm (Failed)
         18 - test_demo_graph_algorithms_ford_fulkerson_algorithm (Failed)
         19 - test_demo_graph_algorithms_kruskals_algorithm (Failed)
         20 - test_demo_graph_algorithms_prims_algorithm (Failed)
         21 - test_demo_graph_algorithms_strongly_connected_components (Failed)
         22 - test_demo_graph_algorithms_topological_sort (Failed)
         23 - test_demo_graph_algorithms_transitive_closure (Failed)
         24 - test_demo_index_index_begin_atEnd_representative (Failed)
         25 - test_demo_index_index_counting (Failed)
         26 - test_demo_index_index_finder (Failed)
         27 - test_demo_index_index_getOccurrences_getFrequency_range_getFibre (Failed)
         28 - test_demo_index_index_iterator (Failed)
         29 - test_demo_index_index_iterator_short (Failed)
         30 - test_demo_index_index_length_countSequences (Failed)
         31 - test_demo_index_index_mummy (Failed)
         32 - test_demo_index_index_open_save (Failed)
         33 - test_demo_index_index_textAt_indexText_saAt_indexRequire (Failed)
         34 - test_demo_input_output_record_reader (Failed)
         35 - test_demo_misc_enumerate_strings (Failed)
         36 - test_demo_modifier_modified_string (Failed)
         37 - test_demo_modifier_modified_string_mod_view (Failed)
         38 - test_demo_modifier_modified_string_nested (Failed)
         39 - test_demo_score_score (Failed)
         40 - test_demo_seeds_seeds_extension (Failed)
         41 - test_demo_seq_io_fai_index_example (Failed)
         42 - test_demo_seq_io_sequence_stream_read (Failed)
         43 - test_demo_sequence_string2 (Failed)
         44 - test_demo_sequence_stringset (Failed)
         78 - test_test_index_fm (SEGFAULT)
         79 - test_test_index_stree_iterators (SEGFAULT)
Errors while running CTest



Kind regards

      Andreas.

-- 
http://fam-tille.de