[Debian-med-packaging] Bug#934467: Meson build system leads to missing library for linker (Was: Bug#934467: pbbam FTBFS with nocheck profile: cram3 missing)

[Andreas Tille]

Control: tags -1 pending

Hi,

I have a problem with latest version of pbbam[1] where upstream switched
to meson as build system.  I get:


...
...  'src/25a6634@@pbbam at sha/          vcf_VcfWriter.cpp.o' 'src/25a6634@@pbbam at sha/pugixml_pugixml.cpp.o' -Wl,--as-needed -Wl,--no-undefined -shared -fPIC -Wl,--start-group -Wl,-soname,libpbbam.so.1.0.6 -g -O2 -fdebug-prefix-map=/build/pbbam-1.0.6+  dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -pthread /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhts.so -lpbcopper -Wl,--end-group
/usr/bin/ld: cannot find -lpbcopper


In the pbuilder chroot everything seems to be prepared to find libpbcopper:

root:/# find /usr/lib/x86_64-linux-gnu -name "*pbcopper*"
/usr/lib/x86_64-linux-gnu/libpbcopper.so
/usr/lib/x86_64-linux-gnu/pkgconfig/pbcopper.pc
root:/# pkg-config --libs pbcopper
-lpbcopper


Am I missing something?

Kind regards

       Andreas.


[1] https://salsa.debian.org/med-team/pbbam

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