[Debian-med-packaging] Bug#947421: delly ftbfs with htslib 1.10.2

[Paul Gevers]

Source: delly
Version: 0.8.1-2
Severity: serious
Justification: ftbfs
Tags: ftbfs sid bullseye

Dear maintainer,

Your package is part of the htslib 1.10.2 transition. I tried to binNMU
your package but it fails to build from source. Please have a look.

Paul

https://buildd.debian.org/status/package.php?p=delly

Tail of log for delly on amd64:

      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~
src/merge.h:330:24: warning: ignoring return value of ‘int
bcf_hdr_set_samples(bcf_hdr_t*, const char*, int)’, declared with
attribute warn_unused_result [-Wunused-result]
  330 |     bcf_hdr_set_samples(hdr[file_c], NULL, false); // Do not
read the sample information
      |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from src/delly.cpp:40:
src/merge.h: In function ‘void torali::mergeBCFs(torali::MergeConfig&,
const std::vector<boost::filesystem::path>&)’:
src/merge.h:592:16: warning: ignoring return value of ‘int
bcf_hdr_write(htsFile*, bcf_hdr_t*)’, declared with attribute
warn_unused_result [-Wunused-result]
  592 |   bcf_hdr_write(fp, hdr_out);
      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~
make[2]: *** [Makefile:61: src/delly] Error 1
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build: make -j4 "INSTALL=install --strip-program=true"
"BUILT_PROGRAMS=src/delly src/dpe" returned exit code 2
make[1]: *** [debian/rules:12: override_dh_auto_build] Error 255
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:9: build-arch] Error 2


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