[Debian-med-packaging] Bug#922351: abyss: MPI version not build

[Andreas Tille]

Package: abyss
Severity: important

Hi,

something is wrong with the parallel build:

$ cat /usr/lib/abyss/ABYSS-P                                                                                                                                                                 
#!/bin/bash                                                                                                                                                                                  
                                                                                                                                                                                             
echo >&2 "error: ABySS was not configured with support for MPI. For details"                                                                                                                 echo >&2 "       on compiling ABySS with MPI suppor see:"                                                                                                                                    
echo >&2 "       https://github.com/bcgsc/abyss#compiling-abyss-from-source"                                                                                                                 
exit 1                                                                                                                                                                                       

Kind regards

      Andreas.

-- System Information:
Debian Release: 9.6
  APT prefers stable-updates
  APT policy: (500, 'stable-updates'), (500, 'stable')
Architecture: amd64 (x86_64)

Kernel: Linux 4.9.0-6-amd64 (SMP w/1 CPU core)
Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8), LANGUAGE=de_DE.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

Versions of packages abyss depends on:
ii  libc6         2.24-11+deb9u3
ii  libgcc1       1:6.3.0-18+deb9u1
ii  libgomp1      6.3.0-18+deb9u1
pn  libopenmpi2   <none>
ii  libsqlite3-0  3.16.2-5+deb9u1
ii  libstdc++6    6.3.0-18+deb9u1
ii  make          4.1-9.1
ii  perl          5.24.1-3+deb9u5

abyss recommends no packages.

Versions of packages abyss suggests:
pn  openmpi-bin  <none>