[Debian-med-packaging] Bug#919928: htslib breaks python-pysam autopkgtest

[Andreas Tille]

Hi Michael,

guessing from the timing I think this failure is caused by


htslib (1.9-10) unstable; urgency=medium

  * Bring the libdeflate, GCS, and S3 updates back to unstable.

 -- Michael R. Crusoe <michael.crusoe at gmail.com>  Wed, 16 Jan 2019 05:23:22 -0800


Since I have no idea about your latest changes I'm tempted to simply
revert to

   htslib (1.9-9) unstable; urgency=medium

(or if test keps on failing

   htslib (1.9-8) unstable; urgency=medium

I'll do so if I will not hear from you in 24hours since lots of our packages
now got a testing removal warning.

Kind regards

         Andreas.

On Mon, Feb 18, 2019 at 08:13:40PM +0100, Paul Gevers wrote:
> Control: severity -1 serious
> 
> On Sun, 20 Jan 2019 19:49:38 +0100 Paul Gevers <elbrus at debian.org> wrote:
> > With a recent upload of htslib the autopkgtest of python-pysam fails in
> > testing when that autopkgtest is run with the binary packages of htslib
> > from unstable. It passes when run with only packages from testing. In
> > tabular form:
> >                        pass            fail
> > htslib                 from testing    1.9-10
> > python-pysam           from testing    0.15.1+ds-1
> > all others             from testing    from testing
> > 
> > I copied some of the output at the bottom of this report.
> > 
> > Currently this regression is blocking the migration of htslib to testing
> > [1]. Due to the nature of this issue, I filed this bug report against
> > both packages. Can you please investigate the situation and reassign the
> > bug to the right package? If needed, please change the bug's severity.
> 
> Since February 12, this is now officially blocking htslib from
> migrating. This bug should be fixed either direction: or htslib fixes
> the regression it causes in python-pysam, or python-pysam fixes its
> autopkgtest to adapt to the new situation. Please agree which package
> should be fixed and reassign it to that package, keeping the version
> information.
> 
> Paul
> 




> _______________________________________________
> Debian-med-packaging mailing list
> Debian-med-packaging at alioth-lists.debian.net
> https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-packaging


-- 
http://fam-tille.de