[Debian-med-packaging] Bug#923457: libbpp-phyl: FTBFS (dh_makeshlibs fails)

[Santiago Vila]

Package: src:libbpp-phyl
Version: 2.4.1-1
Severity: serious
Tags: ftbfs

Dear maintainer:

I tried to build this package in buster but it failed:

--------------------------------------------------------------------------------
[...]
 debian/rules build-arch
dh build-arch
   dh_update_autotools_config -a
   dh_autoreconf -a
   dh_auto_configure -a
	cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu ..
-- The CXX compiler identification is GNU 8.2.0
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info

[... snipped ...]

  _ZTTN3bpp9LLG08_UL3E at Base 2.4.1
  _ZTTN3bpp9RE08CodonE at Base 2.4.1
  _ZTVN3bpp10BppBooleanE at Base 2.4.1
- _ZTVN3bpp11IOExceptionE at Base 2.4.1
+#MISSING: 2.4.1-1# _ZTVN3bpp11IOExceptionE at Base 2.4.1
  _ZTVN3bpp11LG10_EX_EHO13EmbeddedModelE at Base 2.4.1
  _ZTVN3bpp11LG10_EX_EHOE at Base 2.4.1
  _ZTVN3bpp11NaNListenerE at Base 2.4.1
@@ -6100,7 +6133,7 @@
  _ZTVN3bpp23IODistanceMatrixFactoryE at Base 2.4.1
  _ZTVN3bpp23IOFrequenciesSetFactoryE at Base 2.4.1
  _ZTVN3bpp23MarkovModulatedStateMapE at Base 2.4.1
- _ZTVN3bpp23NotImplementedExceptionE at Base 2.4.1
+#MISSING: 2.4.1-1# _ZTVN3bpp23NotImplementedExceptionE at Base 2.4.1
  _ZTVN3bpp24BppOFrequenciesSetFormatE at Base 2.4.1
  _ZTVN3bpp24CladogramDrawBranchEventE at Base 2.4.1
  _ZTVN3bpp24ConstantRateDistributionE at Base 2.4.1
@@ -6117,12 +6150,12 @@
  _ZTVN3bpp24TripletSubstitutionModelE at Base 2.4.1
  _ZTVN3bpp24TsTvSubstitutionRegisterE at Base 2.4.1
  _ZTVN3bpp25AbstractSubstitutionModelE at Base 2.4.1
- _ZTVN3bpp25AlphabetMismatchExceptionE at Base 2.4.1
+#MISSING: 2.4.1-1# _ZTVN3bpp25AlphabetMismatchExceptionE at Base 2.4.1
  _ZTVN3bpp25BppOMultiTreeReaderFormatE at Base 2.4.1
  _ZTVN3bpp25BppOMultiTreeWriterFormatE at Base 2.4.1
  _ZTVN3bpp25BppOTransitionModelFormatE at Base 2.4.1
  _ZTVN3bpp25FullProteinFrequenciesSetE at Base 2.4.1
- _ZTVN3bpp25IndexOutOfBoundsExceptionE at Base 2.4.1
+#MISSING: 2.4.1-1# _ZTVN3bpp25IndexOutOfBoundsExceptionE at Base 2.4.1
  _ZTVN3bpp25MixedSubstitutionModelSetE at Base 2.4.1
  _ZTVN3bpp25PropertyNotFoundExceptionE at Base 2.4.1
  _ZTVN3bpp25SequenceNotFoundExceptionE at Base 2.4.1
@@ -8891,6 +8924,7 @@
  _ZTv0_n416_NK3bpp20AbstractWrappedModel17getFrequenciesSetEv at Base 2.4.1
  _ZTv0_n416_NK3bpp20ConstantDistribution13getUpperBoundEv at Base 2.4.1
  _ZTv0_n416_NK3bpp22AbstractTreeLikelihood16getNumberOfSitesEv at Base 2.4.1
+ _ZTv0_n416_NK3bpp24AlignedSequenceContainer16getNumberOfSitesEv at Base 2.4.1-1
  _ZTv0_n416_NK3bpp24OneChangeTransitionModel17getFrequenciesSetEv at Base 2.4.1
  _ZTv0_n416_NK3bpp27CodonAdHocSubstitutionModel17getFrequenciesSetEv at Base 2.4.1
  _ZTv0_n416_NK3bpp28AbstractDiscreteDistribution13getUpperBoundEv at Base 2.4.1
dh_makeshlibs: failing due to earlier errors
make[1]: *** [debian/rules:15: override_dh_makeshlibs] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:10: binary-arch] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary-arch subprocess returned exit status 2
--------------------------------------------------------------------------------

The build was made in my autobuilder with "dpkg-buildpackage -A"
and it also fails here:

https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/libbpp-phyl.html

If this is really a bug in one of the build-depends, please use reassign and affects,
so that this is still visible in the BTS web page for this package.

Thanks.