[Debian-med-packaging] Bug#919559: picard-tools: autopkgtest regression

[Olivier Sallou]

On 1/17/19 10:07 AM, Paul Gevers wrote:
> Hi Olivier,
>
> On 17-01-2019 09:38, Olivier Sallou wrote:
>> On 1/17/19 9:25 AM, Paul Gevers wrote:
>>> autopkgtest [04:38:35]: test run-unit-test: [-----------------------
>>> Error: Unable to initialize main class picard.cmdline.PicardCommandLine
>>> Caused by: java.lang.NoClassDefFoundError:
>>> org/broadinstitute/barclay/argparser/CommandLineProgramProperties
>>> autopkgtest [04:38:36]: test run-unit-test: -----------------------]
>> picard-tools depends on libbarclay-java. I see that it is has been
>> removed from testing, this is why it fails. I wonder however
>>
>> Previous picard-tools in testing did not depend on this library.
>> Migration of picard-tools is currently blocked by this libbarclay-java
>> bug (#906973)
> libbarclay-java is installed in the test, so that can't explain the failure:
> Setting up libbarclay-java (2.1.0-2) ...

I tested in buster with updated libbarclay-java (2.1.0-3 pushed today to
allow migration to testing) and could rebuild picard-tools from source
(with tests) with no issue.


I tried again with libbarclay-java 2.1.0-2 and faced no issue either.

Olivier



>
> Paul
>
-- 
Olivier Sallou
Univ Rennes, Inria, CNRS, IRISA
Irisa, Campus de Beaulieu
F-35042 RENNES - FRANCE
Tel: 02.99.84.71.95

gpg key id: 4096R/326D8438  (keyring.debian.org)
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