[Debian-med-packaging] Bug#919559: picard-tools: autopkgtest regression

[Olivier Sallou]

On 1/17/19 1:24 PM, Paul Gevers wrote:
> Hi Olivier,
>
> On 17-01-2019 12:12, Olivier Sallou wrote:
>> I tested in buster with updated libbarclay-java (2.1.0-3 pushed today to
>> allow migration to testing) and could rebuild picard-tools from source
>> (with tests) with no issue.
>>
>>
>> I tried again with libbarclay-java 2.1.0-2 and faced no issue either.
> The autopkgtest also fails in unstable. If you are only testing builds,
> and not actually running autopkgtest, than it may be that you have a
> build dependency that you miss during the tests, because you didn't add
> it to the test dependencies.

ok, I think I found the issue.


the manifest  of jar file does not include defined classpath. As a
result, called binary in scripts does not find the dependencies at runtime.

At build/test time, classpath is correctly defined.

I gonna have a look.

>
> Paul
>
>
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-- 
Olivier Sallou
Univ Rennes, Inria, CNRS, IRISA
Irisa, Campus de Beaulieu
F-35042 RENNES - FRANCE
Tel: 02.99.84.71.95

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