[Debian-med-packaging] Bug#920252: toil fails it's autopkg tests

Matthias Klose doko at debian.org
Wed Jan 23 09:11:14 GMT 2019


Package: src:toil
Version: 3.18.0-2
Severity: important
Tags: sid buster

According to
https://ci.debian.net/data/packages/unstable/amd64/t/toil/latest-autopkgtest/log.gz

the tests fail with:
Traceback (most recent call last):
  File "/usr/bin/toil-cwl-runner", line 11, in <module>
    load_entry_point('toil==3.18.0', 'console_scripts', 'toil-cwl-runner')()
  File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 487, in
load_entry_point
    return get_distribution(dist).load_entry_point(group, name)
  File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 2728, in
load_entry_point
    return ep.load()
  File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 2346, in
load
    return self.resolve()
  File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 2352, in
resolve
    module = __import__(self.module_name, fromlist=['__name__'], level=0)
  File "/usr/lib/python3/dist-packages/toil/cwl/cwltoil.py", line 46, in <module>
    import cwltool.load_tool
  File "/usr/lib/python3/dist-packages/cwltool/load_tool.py", line 24, in <module>
    from . import process, update
  File "/usr/lib/python3/dist-packages/cwltool/process.py", line 33, in <module>
    from . import expression
  File "/usr/lib/python3/dist-packages/cwltool/expression.py", line 14, in <module>
    from .sandboxjs import default_timeout, execjs, JavascriptException
  File "/usr/lib/python3/dist-packages/cwltool/sandboxjs.py", line 20, in <module>
    from .utils import json_dumps, onWindows, processes_to_kill, subprocess
  File "/usr/lib/python3/dist-packages/cwltool/utils.py", line 18, in <module>
    from mypy_extensions import TypedDict
ModuleNotFoundError: No module named 'mypy_extensions'



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