[Debian-med-packaging] Bug#931826: ITP: mindthegap -- Performs detection and assembly of DNA insertion variants in NGS read datasets.

[Shayan Doust]

Package: wnpp
Severity: wishlist

Subject: ITP: mindthegap -- Performs detection and assembly of DNA insertion variants in NGS read datasets.
Package: wnpp
Owner: Shayan Doust <hello at shayandoust.me>
Severity: wishlist

* Package name    : mindthegap
  Version         : 2.2.0
  Upstream Author : GATB <gatb.inria.fr>
* URL             : http://github.com/GATB/MindTheGap
* License         : AGPL-3
  Programming Lang: C
  Description     : Performs detection and assembly of DNA insertion variants in NGS read datasets.
 Designed to call insertions of any size, whether they are novel or
 duplicated, homozygous or heterozygous in the donor genome. It takes as
 input a set of reads and a reference genome. It outputs two sets of
 FASTA sequences: one is the set of breakpoints of detection insertion
 sites, the other is the set of assembled insertions for each
 breakpoint. MindTheGap can also be used as a genome assembly finishing
 tool. It can fill the gaps between a set of input contigs without any a
 priori on their relative order and orientation. It outputs the results
 in gfa file.

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/mindthegap