[Debian-med-packaging] Bug#930368: gatb-core: FTBFS due to inaccurate symbols file

[Gilles Filippini]

Source: gatb-core
Version: 1.4.1+git20181225.44d5a44+dfsg-2
Severity: serious
Justification: FTBFS

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Hi,

During a rebuild of gatb-core for unstable on amd64 I experienced a FTBFS at the
dh_makeshlibs step:

   dh_makeshlibs -O--sourcedirectory=gatb-core
dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below
dpkg-gensymbols: warning: debian/libgatbcore2/DEBIAN/symbols doesn't match completely debian/libgatbcore2.symbols.amd64
- --- debian/libgatbcore2.symbols.amd64 (libgatbcore2_1.4.1+git20181225.44d5a44+dfsg-2_amd64)
+++ dpkg-gensymbolsErQvax       2019-06-11 09:56:28.965481025 +0000
@@ -8997,7 +8997,7 @@
  _ZNSt6vectorISt5tupleIJjN4gatb4core5tools4math8LargeIntILi1EEEjjjEESaIS7_EE12emplace_backIJS7_EEEvDpOT_ at Base 1.4.1+git20181225.44d5a44+dfsg
  _ZNSt6vectorISt5tupleIJjN4gatb4core5tools4math8LargeIntILi1EEEjjjEESaIS7_EE17_M_realloc_insertIJS7_EEEvN9__gnu_cxx17__normal_iteratorIPS7_S9_EEDpOT_ at Base 1.4.1
  _ZNSt6vectorISt5tupleIJjN4gatb4core5tools4math8LargeIntILi1EEEjjjEESaIS7_EE7reserveEm at Base 1.4.1
- - _ZNSt6vectorISt5tupleIJjN4gatb4core5tools4math8LargeIntILi2EEEjjjEESaIS7_EE12emplace_backIJS7_EEEvDpOT_ at Base 1.4.1+git20181225.44d5a44+dfsg
+#MISSING: 1.4.1+git20181225.44d5a44+dfsg-2# _ZNSt6vectorISt5tupleIJjN4gatb4core5tools4math8LargeIntILi2EEEjjjEESaIS7_EE12emplace_backIJS7_EEEvDpOT_ at Base 1.4.1+git20181225.44d5a44+dfsg
  _ZNSt6vectorISt5tupleIJjN4gatb4core5tools4math8LargeIntILi2EEEjjjEESaIS7_EE17_M_realloc_insertIJS7_EEEvN9__gnu_cxx17__normal_iteratorIPS7_S9_EEDpOT_ at Base 1.4.1
  _ZNSt6vectorISt5tupleIJjN4gatb4core5tools4math8LargeIntILi2EEEjjjEESaIS7_EE7reserveEm at Base 1.4.1
  _ZNSt6vectorISt5tupleIJjN4gatb4core5tools4math8LargeIntILi3EEEjjjEESaIS7_EE17_M_realloc_insertIJS7_EEEvN9__gnu_cxx17__normal_iteratorIPS7_S9_EEDpOT_ at Base 1.4.1
@@ -9007,7 +9007,7 @@
  _ZNSt6vectorISt5tupleIJmiEESaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_ at Base 1.4.1
  _ZNSt6vectorISt5tupleIJmiNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEESaIS7_EE17_M_realloc_insertIJS7_EEEvN9__gnu_cxx17__normal_iteratorIPS7_S9_EEDpOT_ at Base 1.4.1
  _ZNSt6vectorISt6threadSaIS0_EE17_M_realloc_insertIJZN10ThreadPoolC4EmEUlvE_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_ at Base 1.4.1
- - _ZNSt6vectorIbSaIbEE13_M_initializeEm at Base 1.4.1+git20181225.44d5a44+dfsg
+#MISSING: 1.4.1+git20181225.44d5a44+dfsg-2# _ZNSt6vectorIbSaIbEE13_M_initializeEm at Base 1.4.1+git20181225.44d5a44+dfsg
  _ZNSt6vectorIbSaIbEE13_M_insert_auxESt13_Bit_iteratorb at Base 1.4.1
  _ZNSt6vectorIbSaIbEE13_M_reallocateEm at Base 1.4.1
  _ZNSt6vectorIbSaIbEE14_M_fill_insertESt13_Bit_iteratormb at Base 1.4.1
dh_makeshlibs: failing due to earlier errors
make: *** [debian/rules:10: binary] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary subprocess returned exit status 2

Thanks,

_g.

- -- System Information:
Debian Release: buster/sid
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 4.19.0-5-amd64 (SMP w/4 CPU cores)
Kernel taint flags: TAINT_WARN
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

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