[Debian-med-packaging] Bug#923457: test_likelihood_nh (Failed)

Julien Y. Dutheil jy.dutheil at gmail.com
Tue Mar 12 10:56:49 GMT 2019


Dear Andreas,

Ok, I have committed a patch removing the test. But just realized I did not
update the changelog... should that now be version 2.4.1-3?

Cheers,

Julien.

On Tue, Mar 12, 2019 at 11:03 AM Andreas Tille <tille at debian.org> wrote:

> On Tue, Mar 12, 2019 at 09:53:10AM +0100, Julien Y. Dutheil wrote:
> > This all boils down to the fact that this unit test is badly designed: it
> > basically maximizes a function from initial random values. I some
> > particular combinations of initial values though, the convergence may
> fail
> > or take too much time. I will redesign the test, but do not have time at
> > the moment. Would it be possible to just deactivate that test for now?
>
> Sure.  IMHO that's the most straightforward way to deal with this issue.
> Since I expect you to be more familiar with the tests I simply assumed
> that you find a more elegant way to deactivate the test than I. ;-)
>
> > In the meantime I also found more symbols errors in libbpp-popgen and I
> > fixed that. I also propagated your modification from bpp-phyl to bpp-seq
> > and bpp-popgen.
>
> I've seen the commits.  Thanks for this.  I'll upload in case there will
> be more bugs reported.  In Freeze we touch only packages with RC bugs.
>
> > On a side note: how can I change my email address (the one that appears
> in
> > the changelog file) ? That one is now deprecated.
>
> It should be changed in debian/control in the Uploaders field as well.
> Both strings need to match each other.
>
> Thanks for your contribution
>
>       Andreas.
>
> --
> http://fam-tille.de
>


-- 
Julien Y. Dutheil, Ph-D
0 (+49) 4522 763 298

§ Max Planck Institute for Evolutionary Biology
Molecular Systems Evolution
Department of Evolutionary Genetics
Plön -- GERMANY

§ Institute of Evolutionary Sciences - Montpellier
University of Montpellier 2 -- FRANCE
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