[Debian-med-packaging] Bug#924472: beads: FTBFS (quazip5/quazip.h: No such file or directory)

Santiago Vila sanvila at debian.org
Wed Mar 13 09:46:07 GMT 2019 

Package: src:beads
Version: 1.1.18+dfsg-2
Severity: serious
Tags: ftbfs

Dear maintainer:

I tried to build this package in buster but it failed:

--------------------------------------------------------------------------------
[...]
 debian/rules build-arch
dh build-arch
   dh_update_autotools_config -a
   dh_autoreconf -a
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/beads-1.1.18+dfsg'
dh_auto_configure -- -DQ_OS_X11=ON
	cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DQ_OS_X11=ON ..
-- The CXX compiler identification is GNU 8.3.0
-- The C compiler identification is GNU 8.3.0
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done

[... snipped ...]

cd /<<BUILDDIR>>/beads-1.1.18+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++  -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_XML_LIB -I/usr/include/odsstream -I/<<BUILDDIR>>/beads-1.1.18+dfsg/src/cimg -I/usr/include/x86_64-linux-gnu -I/usr/lib/x86_64-linux-gnu -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/beads-1.1.18+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11  -Dcimg_use_tiff -Dcimg_use_jpeg -Dcimg_use_zlib -Dcimg_use_png    -Dcimg_use_tiff -Dcimg_use_jpeg -Dcimg_use_zlib -Dcimg_use_png     -fPIC -std=gnu++11 -o CMakeFiles/cppbeads.dir/images/imageNumber.cpp.o -c /<<BUILDDIR>>/beads-1.1.18+dfsg/src/images/imageNumber.cpp
[ 43%] Building CXX object src/CMakeFiles/cppbeads.dir/images/parameterNumber.cpp.o
cd /<<BUILDDIR>>/beads-1.1.18+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++  -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_XML_LIB -I/usr/include/odsstream -I/<<BUILDDIR>>/beads-1.1.18+dfsg/src/cimg -I/usr/include/x86_64-linux-gnu -I/usr/lib/x86_64-linux-gnu -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/beads-1.1.18+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11  -Dcimg_use_tiff -Dcimg_use_jpeg -Dcimg_use_zlib -Dcimg_use_png    -Dcimg_use_tiff -Dcimg_use_jpeg -Dcimg_use_zlib -Dcimg_use_png     -fPIC -std=gnu++11 -o CMakeFiles/cppbeads.dir/images/parameterNumber.cpp.o -c /<<BUILDDIR>>/beads-1.1.18+dfsg/src/images/parameterNumber.cpp
[ 45%] Building CXX object src/CMakeFiles/cppbeads.dir/images/imageContours.cpp.o
cd /<<BUILDDIR>>/beads-1.1.18+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++  -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_XML_LIB -I/usr/include/odsstream -I/<<BUILDDIR>>/beads-1.1.18+dfsg/src/cimg -I/usr/include/x86_64-linux-gnu -I/usr/lib/x86_64-linux-gnu -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/beads-1.1.18+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11  -Dcimg_use_tiff -Dcimg_use_jpeg -Dcimg_use_zlib -Dcimg_use_png    -Dcimg_use_tiff -Dcimg_use_jpeg -Dcimg_use_zlib -Dcimg_use_png     -fPIC -std=gnu++11 -o CMakeFiles/cppbeads.dir/images/imageContours.cpp.o -c /<<BUILDDIR>>/beads-1.1.18+dfsg/src/images/imageContours.cpp
[ 48%] Building CXX object src/CMakeFiles/cppbeads.dir/spotPROTICdbDocument.cpp.o
cd /<<BUILDDIR>>/beads-1.1.18+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++  -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_XML_LIB -I/usr/include/odsstream -I/<<BUILDDIR>>/beads-1.1.18+dfsg/src/cimg -I/usr/include/x86_64-linux-gnu -I/usr/lib/x86_64-linux-gnu -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/beads-1.1.18+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11  -Dcimg_use_tiff -Dcimg_use_jpeg -Dcimg_use_zlib -Dcimg_use_png    -Dcimg_use_tiff -Dcimg_use_jpeg -Dcimg_use_zlib -Dcimg_use_png     -fPIC -std=gnu++11 -o CMakeFiles/cppbeads.dir/spotPROTICdbDocument.cpp.o -c /<<BUILDDIR>>/beads-1.1.18+dfsg/src/spotPROTICdbDocument.cpp
[ 51%] Building CXX object src/CMakeFiles/cppbeads.dir/spot.cpp.o
cd /<<BUILDDIR>>/beads-1.1.18+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++  -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_XML_LIB -I/usr/include/odsstream -I/<<BUILDDIR>>/beads-1.1.18+dfsg/src/cimg -I/usr/include/x86_64-linux-gnu -I/usr/lib/x86_64-linux-gnu -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/beads-1.1.18+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11  -Dcimg_use_tiff -Dcimg_use_jpeg -Dcimg_use_zlib -Dcimg_use_png    -Dcimg_use_tiff -Dcimg_use_jpeg -Dcimg_use_zlib -Dcimg_use_png     -fPIC -std=gnu++11 -o CMakeFiles/cppbeads.dir/spot.cpp.o -c /<<BUILDDIR>>/beads-1.1.18+dfsg/src/spot.cpp
[ 54%] Building CXX object src/CMakeFiles/cppbeads.dir/spotDocument.cpp.o
cd /<<BUILDDIR>>/beads-1.1.18+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++  -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_XML_LIB -I/usr/include/odsstream -I/<<BUILDDIR>>/beads-1.1.18+dfsg/src/cimg -I/usr/include/x86_64-linux-gnu -I/usr/lib/x86_64-linux-gnu -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/beads-1.1.18+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11  -Dcimg_use_tiff -Dcimg_use_jpeg -Dcimg_use_zlib -Dcimg_use_png    -Dcimg_use_tiff -Dcimg_use_jpeg -Dcimg_use_zlib -Dcimg_use_png     -fPIC -std=gnu++11 -o CMakeFiles/cppbeads.dir/spotDocument.cpp.o -c /<<BUILDDIR>>/beads-1.1.18+dfsg/src/spotDocument.cpp
[ 56%] Building CXX object src/CMakeFiles/cppbeads.dir/spotSvgDocument.cpp.o
cd /<<BUILDDIR>>/beads-1.1.18+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++  -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_XML_LIB -I/usr/include/odsstream -I/<<BUILDDIR>>/beads-1.1.18+dfsg/src/cimg -I/usr/include/x86_64-linux-gnu -I/usr/lib/x86_64-linux-gnu -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/beads-1.1.18+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11  -Dcimg_use_tiff -Dcimg_use_jpeg -Dcimg_use_zlib -Dcimg_use_png    -Dcimg_use_tiff -Dcimg_use_jpeg -Dcimg_use_zlib -Dcimg_use_png     -fPIC -std=gnu++11 -o CMakeFiles/cppbeads.dir/spotSvgDocument.cpp.o -c /<<BUILDDIR>>/beads-1.1.18+dfsg/src/spotSvgDocument.cpp
[ 59%] Building CXX object src/CMakeFiles/cppbeads.dir/images/imageDeNovo.cpp.o
cd /<<BUILDDIR>>/beads-1.1.18+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++  -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_XML_LIB -I/usr/include/odsstream -I/<<BUILDDIR>>/beads-1.1.18+dfsg/src/cimg -I/usr/include/x86_64-linux-gnu -I/usr/lib/x86_64-linux-gnu -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/beads-1.1.18+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11  -Dcimg_use_tiff -Dcimg_use_jpeg -Dcimg_use_zlib -Dcimg_use_png    -Dcimg_use_tiff -Dcimg_use_jpeg -Dcimg_use_zlib -Dcimg_use_png     -fPIC -std=gnu++11 -o CMakeFiles/cppbeads.dir/images/imageDeNovo.cpp.o -c /<<BUILDDIR>>/beads-1.1.18+dfsg/src/images/imageDeNovo.cpp
[ 62%] Linking CXX static library libcppbeads-qt5.a
cd /<<BUILDDIR>>/beads-1.1.18+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/cppbeads.dir/cmake_clean_target.cmake
cd /<<BUILDDIR>>/beads-1.1.18+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cppbeads.dir/link.txt --verbose=1
/usr/bin/ar qc libcppbeads-qt5.a  CMakeFiles/cppbeads.dir/ConfigFile/ConfigFile.cpp.o CMakeFiles/cppbeads.dir/parameters.cpp.o CMakeFiles/cppbeads.dir/encode/base64.cpp.o CMakeFiles/cppbeads.dir/images/imageIntensity.cpp.o CMakeFiles/cppbeads.dir/images/imageDirect.cpp.o CMakeFiles/cppbeads.dir/images/imageCoule.cpp.o CMakeFiles/cppbeads.dir/images/imagePaths.cpp.o CMakeFiles/cppbeads.dir/images/imageConfluent.cpp.o CMakeFiles/cppbeads.dir/images/imageProb.cpp.o CMakeFiles/cppbeads.dir/images/parameterProb.cpp.o CMakeFiles/cppbeads.dir/parameterDetection.cpp.o CMakeFiles/cppbeads.dir/images/parameterConfluent.cpp.o CMakeFiles/cppbeads.dir/detection.cpp.o CMakeFiles/cppbeads.dir/images/imageDetection.cpp.o CMakeFiles/cppbeads.dir/images/imageNumber.cpp.o CMakeFiles/cppbeads.dir/images/parameterNumber.cpp.o CMakeFiles/cppbeads.dir/images/imageContours.cpp.o CMakeFiles/cppbeads.dir/spotPROTICdbDocument.cpp.o CMakeFiles/cppbeads.dir/spot.cpp.o CMakeFiles/cppbeads.dir/spotDocument.cpp.o CMakeFiles/cppbeads.dir/spotSvgDocument.cpp.o CMakeFiles/cppbeads.dir/images/imageDeNovo.cpp.o
/usr/bin/ranlib libcppbeads-qt5.a
make[3]: Leaving directory '/<<BUILDDIR>>/beads-1.1.18+dfsg/obj-x86_64-linux-gnu'
[ 62%] Built target cppbeads
make -f src/CMakeFiles/beads.dir/build.make src/CMakeFiles/beads.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/beads-1.1.18+dfsg/obj-x86_64-linux-gnu'
cd /<<BUILDDIR>>/beads-1.1.18+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/beads-1.1.18+dfsg /<<BUILDDIR>>/beads-1.1.18+dfsg/src /<<BUILDDIR>>/beads-1.1.18+dfsg/obj-x86_64-linux-gnu /<<BUILDDIR>>/beads-1.1.18+dfsg/obj-x86_64-linux-gnu/src /<<BUILDDIR>>/beads-1.1.18+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/beads.dir/DependInfo.cmake --color=
Scanning dependencies of target beads
make[3]: Leaving directory '/<<BUILDDIR>>/beads-1.1.18+dfsg/obj-x86_64-linux-gnu'
make -f src/CMakeFiles/beads.dir/build.make src/CMakeFiles/beads.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/beads-1.1.18+dfsg/obj-x86_64-linux-gnu'
[ 64%] Building CXX object src/CMakeFiles/beads.dir/beads.cpp.o
cd /<<BUILDDIR>>/beads-1.1.18+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++  -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_XML_LIB -I/usr/include/odsstream -I/<<BUILDDIR>>/beads-1.1.18+dfsg/src/cimg -I/usr/include/x86_64-linux-gnu -I/usr/lib/x86_64-linux-gnu -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/beads-1.1.18+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11  -Dcimg_use_tiff -Dcimg_use_jpeg -Dcimg_use_zlib -Dcimg_use_png    -Dcimg_use_tiff -Dcimg_use_jpeg -Dcimg_use_zlib -Dcimg_use_png     -fPIC -std=gnu++11 -o CMakeFiles/beads.dir/beads.cpp.o -c /<<BUILDDIR>>/beads-1.1.18+dfsg/src/beads.cpp
In file included from /<<BUILDDIR>>/beads-1.1.18+dfsg/src/beads.cpp:22:
/usr/include/odsstream/odsdocwriter.h:27:10: fatal error: quazip5/quazip.h: No such file or directory
 #include <quazip5/quazip.h>
          ^~~~~~~~~~~~~~~~~~
compilation terminated.
make[3]: *** [src/CMakeFiles/beads.dir/build.make:66: src/CMakeFiles/beads.dir/beads.cpp.o] Error 1
make[3]: Leaving directory '/<<BUILDDIR>>/beads-1.1.18+dfsg/obj-x86_64-linux-gnu'
make[2]: *** [CMakeFiles/Makefile2:162: src/CMakeFiles/beads.dir/all] Error 2
make[2]: Leaving directory '/<<BUILDDIR>>/beads-1.1.18+dfsg/obj-x86_64-linux-gnu'
make[1]: *** [Makefile:155: all] Error 2
make[1]: Leaving directory '/<<BUILDDIR>>/beads-1.1.18+dfsg/obj-x86_64-linux-gnu'
dh_auto_build: cd obj-x86_64-linux-gnu && make -j1 "INSTALL=install --strip-program=true" returned exit code 2
make: *** [debian/rules:11: build-arch] Error 2
dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2
--------------------------------------------------------------------------------

(The above is just how the build ends and not necessarily the most relevant part)

The build was made in my autobuilder with "dpkg-buildpackage -A"
and it also fails here:

https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/beads.html

where you can get a full build log if you need it.

If this is really a bug in one of the build-depends, please use reassign and affects,
so that this is still visible in the BTS web page for this package.

Thanks.

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