[Debian-med-packaging] Bug#925673: elastix: ftbfs with GCC-9
Matthias Klose
doko at debian.org
Wed Mar 27 19:44:50 GMT 2019
Package: src:elastix
Version: 4.9.0-1
Severity: normal
Tags: sid bullseye
User: debian-gcc at lists.debian.org
Usertags: ftbfs-gcc-9
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-9/g++-9, but succeeds to build with gcc-8/g++-8. The
severity of this report will be raised before the bullseye release,
so nothing has to be done for the buster release.
The full build log can be found at:
http://people.debian.org/~doko/logs/gcc9-20190321/elastix_4.9.0-1_unstable_gcc9.log
The last lines of the build log are at the end of this report.
To build with GCC 9, either set CC=gcc-9 CXX=g++-9 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-9/porting_to.html
GCC 9 also passes the linker option --as-needed by default; typical
build issues are passing libraries before object files to the linker,
or underlinking of convenience libraries built from the same source.
[...]
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/x86_64-linux-gnu -I/usr/include/nifti -I/usr/include/double-conversion -I/<<PKGBUILDDIR>>/Common -I/<<PKGBUILDDIR>>/Common/CostFunctions -I/<<PKGBUILDDIR>>/Common/ImageSamplers -I/<<PKGBUILDDIR>>/Common/LineSearchOptimizers -I/<<PKGBUILDDIR>>/Common/ParameterFileParser -I/<<PKGBUILDDIR>>/Common/Transforms -I/<<PKGBUILDDIR>>/Common/xout -I/<<PKGBUILDDIR>>/Common/MevisDicomTiff -I/<<PKGBUILDDIR>>/Core -I/<<PKGBUILDDIR>>/Core/Install -I/<<PKGBUILDDIR>>/Core/Kernel -I/<<PKGBUILDDIR>>/Core/ComponentBaseClasses -I/<<PKGBUILDDIR>>/Core/Configuration -I/<<PKGBUILDDIR>>/Core/Main -I/<<PKGBUILDDIR>>/Components/FixedImagePyramids -I/<<PKGBUILDDIR>>/Components/ImageSamplers -I/<<PKGBUILDDIR>>/Components/Interpolators -I/<<PKGBUILDDIR>>/Components/Metrics -I/<<PKGBUILDDIR>>/Components/MovingImagePyramids -I/<<PKGBUILDDIR>>/Components/Optimizers -I/<<PKGBUILDDIR>>/Components/Registrations -I/<<PKGBUILDDIR>>/Components/ResampleInterpolators -I/<<PKGBUILDDIR>>/Components/Resamplers -I/<<PKGBUILDDIR>>/Components/Transforms -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -isystem /usr/include/gdcm-2.8 -isystem /usr/include/ITK-4.12 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -o CMakeFiles/itkAdvanceOneStepParallellizationTest.dir/itkAdvanceOneStepParallellizationTest.cxx.o -c /<<PKGBUILDDIR>>/Testing/itkAdvanceOneStepParallellizationTest.cxx
[ 34%] Building CXX object Testing/CMakeFiles/itkAdvanceOneStepParallellizationTest.dir/itkCommandLineArgumentParser.cxx.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/x86_64-linux-gnu -I/usr/include/nifti -I/usr/include/double-conversion -I/<<PKGBUILDDIR>>/Common -I/<<PKGBUILDDIR>>/Common/CostFunctions -I/<<PKGBUILDDIR>>/Common/ImageSamplers -I/<<PKGBUILDDIR>>/Common/LineSearchOptimizers -I/<<PKGBUILDDIR>>/Common/ParameterFileParser -I/<<PKGBUILDDIR>>/Common/Transforms -I/<<PKGBUILDDIR>>/Common/xout -I/<<PKGBUILDDIR>>/Common/MevisDicomTiff -I/<<PKGBUILDDIR>>/Core -I/<<PKGBUILDDIR>>/Core/Install -I/<<PKGBUILDDIR>>/Core/Kernel -I/<<PKGBUILDDIR>>/Core/ComponentBaseClasses -I/<<PKGBUILDDIR>>/Core/Configuration -I/<<PKGBUILDDIR>>/Core/Main -I/<<PKGBUILDDIR>>/Components/FixedImagePyramids -I/<<PKGBUILDDIR>>/Components/ImageSamplers -I/<<PKGBUILDDIR>>/Components/Interpolators -I/<<PKGBUILDDIR>>/Components/Metrics -I/<<PKGBUILDDIR>>/Components/MovingImagePyramids -I/<<PKGBUILDDIR>>/Components/Optimizers -I/<<PKGBUILDDIR>>/Components/Registrations -I/<<PKGBUILDDIR>>/Components/ResampleInterpolators -I/<<PKGBUILDDIR>>/Components/Resamplers -I/<<PKGBUILDDIR>>/Components/Transforms -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -isystem /usr/include/gdcm-2.8 -isystem /usr/include/ITK-4.12 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -o CMakeFiles/itkAdvanceOneStepParallellizationTest.dir/itkCommandLineArgumentParser.cxx.o -c /<<PKGBUILDDIR>>/Testing/itkCommandLineArgumentParser.cxx
[ 34%] Building CXX object Testing/CMakeFiles/itkThinPlateSplineTransformPerformanceTest.dir/itkCommandLineArgumentParser.cxx.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/x86_64-linux-gnu -I/usr/include/nifti -I/usr/include/double-conversion -I/<<PKGBUILDDIR>>/Common -I/<<PKGBUILDDIR>>/Common/CostFunctions -I/<<PKGBUILDDIR>>/Common/ImageSamplers -I/<<PKGBUILDDIR>>/Common/LineSearchOptimizers -I/<<PKGBUILDDIR>>/Common/ParameterFileParser -I/<<PKGBUILDDIR>>/Common/Transforms -I/<<PKGBUILDDIR>>/Common/xout -I/<<PKGBUILDDIR>>/Common/MevisDicomTiff -I/<<PKGBUILDDIR>>/Core -I/<<PKGBUILDDIR>>/Core/Install -I/<<PKGBUILDDIR>>/Core/Kernel -I/<<PKGBUILDDIR>>/Core/ComponentBaseClasses -I/<<PKGBUILDDIR>>/Core/Configuration -I/<<PKGBUILDDIR>>/Core/Main -I/<<PKGBUILDDIR>>/Components/FixedImagePyramids -I/<<PKGBUILDDIR>>/Components/ImageSamplers -I/<<PKGBUILDDIR>>/Components/Interpolators -I/<<PKGBUILDDIR>>/Components/Metrics -I/<<PKGBUILDDIR>>/Components/MovingImagePyramids -I/<<PKGBUILDDIR>>/Components/Optimizers -I/<<PKGBUILDDIR>>/Components/Registrations -I/<<PKGBUILDDIR>>/Components/ResampleInterpolators -I/<<PKGBUILDDIR>>/Components/Resamplers -I/<<PKGBUILDDIR>>/Components/Transforms -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -isystem /usr/include/gdcm-2.8 -isystem /usr/include/ITK-4.12 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -o CMakeFiles/itkThinPlateSplineTransformPerformanceTest.dir/itkCommandLineArgumentParser.cxx.o -c /<<PKGBUILDDIR>>/Testing/itkCommandLineArgumentParser.cxx
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cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/x86_64-linux-gnu -I/usr/include/nifti -I/usr/include/double-conversion -I/<<PKGBUILDDIR>>/Common -I/<<PKGBUILDDIR>>/Common/CostFunctions -I/<<PKGBUILDDIR>>/Common/ImageSamplers -I/<<PKGBUILDDIR>>/Common/LineSearchOptimizers -I/<<PKGBUILDDIR>>/Common/ParameterFileParser -I/<<PKGBUILDDIR>>/Common/Transforms -I/<<PKGBUILDDIR>>/Common/xout -I/<<PKGBUILDDIR>>/Common/MevisDicomTiff -I/<<PKGBUILDDIR>>/Core -I/<<PKGBUILDDIR>>/Core/Install -I/<<PKGBUILDDIR>>/Core/Kernel -I/<<PKGBUILDDIR>>/Core/ComponentBaseClasses -I/<<PKGBUILDDIR>>/Core/Configuration -I/<<PKGBUILDDIR>>/Core/Main -I/<<PKGBUILDDIR>>/Components/FixedImagePyramids -I/<<PKGBUILDDIR>>/Components/ImageSamplers -I/<<PKGBUILDDIR>>/Components/Interpolators -I/<<PKGBUILDDIR>>/Components/Metrics -I/<<PKGBUILDDIR>>/Components/MovingImagePyramids -I/<<PKGBUILDDIR>>/Components/Optimizers -I/<<PKGBUILDDIR>>/Components/Registrations -I/<<PKGBUILDDIR>>/Components/ResampleInterpolators -I/<<PKGBUILDDIR>>/Components/Resamplers -I/<<PKGBUILDDIR>>/Components/Transforms -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -isystem /usr/include/gdcm-2.8 -isystem /usr/include/ITK-4.12 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -o CMakeFiles/itkThinPlateSplineTransformTest.dir/itkCommandLineArgumentParser.cxx.o -c /<<PKGBUILDDIR>>/Testing/itkCommandLineArgumentParser.cxx
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/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -lniftiio -rdynamic CMakeFiles/itkAdvanceOneStepParallellizationTest.dir/itkAdvanceOneStepParallellizationTest.cxx.o CMakeFiles/itkAdvanceOneStepParallellizationTest.dir/itkCommandLineArgumentParser.cxx.o -o ../bin/itkAdvanceOneStepParallellizationTest ../bin/libparam-4.9.a ../bin/libmevisdcmtiff-4.9.a -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/x86_64-linux-gnu/libi2d.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg8.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg12.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg16.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcmr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmrt.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmseg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmtract.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.14.3.6.4 /usr/lib/libITKDeprecated-4.12.so.1 /usr/lib/libITKIOLSM-4.12.so.1 -lexpat /usr/lib/libITKIOMesh-4.12.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOCSV-4.12.so.1 /usr/lib/libITKIOHDF5-4.12.so.1 /usr/lib/libITKIOMRC-4.12.so.1 /usr/lib/libITKOptimizersv4-4.12.so.1 /usr/lib/libITKReview-4.12.so.1 /usr/lib/libITKVideoIO-4.12.so.1 -lCharLS /usr/lib/x86_64-linux-gnu/libdcmtls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmsr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmimage.so.14.3.6.4 -ljpeg -lpng -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.14.3.6.4 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmnet.so.14.3.6.4 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmfg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmiod.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmdata.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/liboflog.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libofstd.so.14.3.6.4 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.12.so.1 /usr/lib/libITKgiftiio-4.12.so.1 -lexpat /usr/lib/libITKIOBMP-4.12.so.1 /usr/lib/libITKIOGDCM-4.12.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.2.8.8 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.2.8.8 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.2.8.8 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.2.8.8 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.2.8.8 /usr/lib/libITKIOGIPL-4.12.so.1 /usr/lib/libITKIOJPEG-4.12.so.1 /usr/lib/libITKIOMeta-4.12.so.1 /usr/lib/libITKIONIFTI-4.12.so.1 /usr/lib/libITKIONRRD-4.12.so.1 /usr/lib/libITKNrrdIO-4.12.so.1 /usr/lib/libITKIOPNG-4.12.so.1 /usr/lib/libITKIOTIFF-4.12.so.1 /usr/lib/libITKIOVTK-4.12.so.1 /usr/lib/libITKLabelMap-4.12.so.1 /usr/lib/libITKQuadEdgeMesh-4.12.so.1 /usr/lib/libITKPolynomials-4.12.so.1 /usr/lib/libITKBiasCorrection-4.12.so.1 /usr/lib/libITKBioCell-4.12.so.1 /usr/lib/libITKFFT-4.12.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.12.so.1 /usr/lib/libITKIOStimulate-4.12.so.1 /usr/lib/libITKIOSpatialObjects-4.12.so.1 /usr/lib/libITKIOXML-4.12.so.1 /usr/lib/libITKFEM-4.12.so.1 /usr/lib/libITKMetaIO-4.12.so.1 -lz /usr/lib/libITKOptimizers-4.12.so.1 /usr/lib/libITKIOGE-4.12.so.1 /usr/lib/libITKIOSiemens-4.12.so.1 /usr/lib/libITKIOIPL-4.12.so.1 /usr/lib/libITKIOTransformHDF5-4.12.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.12.so.1 /usr/lib/libITKIOTransformMatlab-4.12.so.1 /usr/lib/libITKIOTransformBase-4.12.so.1 /usr/lib/libITKTransformFactory-4.12.so.1 /usr/lib/libITKKLMRegionGrowing-4.12.so.1 /usr/lib/libITKVTK-4.12.so.1 /usr/lib/libITKWatersheds-4.12.so.1 /usr/lib/libITKStatistics-4.12.so.1 /usr/lib/libitkNetlibSlatec-4.12.so.1 /usr/lib/libITKSpatialObjects-4.12.so.1 /usr/lib/libITKMesh-4.12.so.1 /usr/lib/libITKTransform-4.12.so.1 /usr/lib/libITKPath-4.12.so.1 /usr/lib/libitkopenjpeg-4.12.so.1 /usr/lib/libITKIOImageBase-4.12.so.1 /usr/lib/libITKVideoCore-4.12.so.1 /usr/lib/libITKCommon-4.12.so.1 /usr/lib/libitksys-4.12.so.1 /usr/lib/libITKVNLInstantiation-4.12.so.1 /usr/lib/libitkvnl_algo-4.12.so.1 /usr/lib/libitkvnl-4.12.so.1 /usr/lib/libitkv3p_netlib-4.12.so.1 /usr/lib/libitknetlib-4.12.so.1 /usr/lib/libitkvcl-4.12.so.1 -lm -lpthread -ldl -lm
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[ 36%] Linking CXX executable ../bin/itkThinPlateSplineTransformPerformanceTest
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Testing && /usr/bin/cmake -E cmake_link_script CMakeFiles/itkThinPlateSplineTransformPerformanceTest.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -lniftiio -rdynamic CMakeFiles/itkThinPlateSplineTransformPerformanceTest.dir/itkThinPlateSplineTransformPerformanceTest.cxx.o CMakeFiles/itkThinPlateSplineTransformPerformanceTest.dir/itkCommandLineArgumentParser.cxx.o -o ../bin/itkThinPlateSplineTransformPerformanceTest ../bin/libparam-4.9.a ../bin/libmevisdcmtiff-4.9.a -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/x86_64-linux-gnu/libi2d.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg8.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg12.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg16.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcmr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmrt.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmseg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmtract.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.14.3.6.4 /usr/lib/libITKDeprecated-4.12.so.1 /usr/lib/libITKIOLSM-4.12.so.1 -lexpat /usr/lib/libITKIOMesh-4.12.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOCSV-4.12.so.1 /usr/lib/libITKIOHDF5-4.12.so.1 /usr/lib/libITKIOMRC-4.12.so.1 /usr/lib/libITKOptimizersv4-4.12.so.1 /usr/lib/libITKReview-4.12.so.1 /usr/lib/libITKVideoIO-4.12.so.1 -lCharLS /usr/lib/x86_64-linux-gnu/libdcmtls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmsr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmimage.so.14.3.6.4 -ljpeg -lpng -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.14.3.6.4 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmnet.so.14.3.6.4 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmfg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmiod.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmdata.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/liboflog.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libofstd.so.14.3.6.4 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.12.so.1 /usr/lib/libITKgiftiio-4.12.so.1 -lexpat /usr/lib/libITKIOBMP-4.12.so.1 /usr/lib/libITKIOGDCM-4.12.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.2.8.8 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.2.8.8 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.2.8.8 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.2.8.8 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.2.8.8 /usr/lib/libITKIOGIPL-4.12.so.1 /usr/lib/libITKIOJPEG-4.12.so.1 /usr/lib/libITKIOMeta-4.12.so.1 /usr/lib/libITKIONIFTI-4.12.so.1 /usr/lib/libITKIONRRD-4.12.so.1 /usr/lib/libITKNrrdIO-4.12.so.1 /usr/lib/libITKIOPNG-4.12.so.1 /usr/lib/libITKIOTIFF-4.12.so.1 /usr/lib/libITKIOVTK-4.12.so.1 /usr/lib/libITKLabelMap-4.12.so.1 /usr/lib/libITKQuadEdgeMesh-4.12.so.1 /usr/lib/libITKPolynomials-4.12.so.1 /usr/lib/libITKBiasCorrection-4.12.so.1 /usr/lib/libITKBioCell-4.12.so.1 /usr/lib/libITKFFT-4.12.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.12.so.1 /usr/lib/libITKIOStimulate-4.12.so.1 /usr/lib/libITKIOSpatialObjects-4.12.so.1 /usr/lib/libITKIOXML-4.12.so.1 /usr/lib/libITKFEM-4.12.so.1 /usr/lib/libITKMetaIO-4.12.so.1 -lz /usr/lib/libITKOptimizers-4.12.so.1 /usr/lib/libITKIOGE-4.12.so.1 /usr/lib/libITKIOSiemens-4.12.so.1 /usr/lib/libITKIOIPL-4.12.so.1 /usr/lib/libITKIOTransformHDF5-4.12.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.12.so.1 /usr/lib/libITKIOTransformMatlab-4.12.so.1 /usr/lib/libITKIOTransformBase-4.12.so.1 /usr/lib/libITKTransformFactory-4.12.so.1 /usr/lib/libITKKLMRegionGrowing-4.12.so.1 /usr/lib/libITKVTK-4.12.so.1 /usr/lib/libITKWatersheds-4.12.so.1 /usr/lib/libITKStatistics-4.12.so.1 /usr/lib/libitkNetlibSlatec-4.12.so.1 /usr/lib/libITKSpatialObjects-4.12.so.1 /usr/lib/libITKMesh-4.12.so.1 /usr/lib/libITKTransform-4.12.so.1 /usr/lib/libITKPath-4.12.so.1 /usr/lib/libitkopenjpeg-4.12.so.1 /usr/lib/libITKIOImageBase-4.12.so.1 /usr/lib/libITKVideoCore-4.12.so.1 /usr/lib/libITKCommon-4.12.so.1 /usr/lib/libitksys-4.12.so.1 /usr/lib/libITKVNLInstantiation-4.12.so.1 /usr/lib/libitkvnl_algo-4.12.so.1 /usr/lib/libitkvnl-4.12.so.1 /usr/lib/libitkv3p_netlib-4.12.so.1 /usr/lib/libitknetlib-4.12.so.1 /usr/lib/libitkvcl-4.12.so.1 -lm -lpthread -ldl -lm
/usr/bin/ld: /usr/lib/libITKgiftiio-4.12.so.1: undefined reference to `compress2'
/usr/bin/ld: /usr/lib/libITKgiftiio-4.12.so.1: undefined reference to `uncompress'
/usr/bin/ld: /usr/lib/libITKgiftiio-4.12.so.1: undefined reference to `nifti_datatype_to_string'
collect2: error: ld returned 1 exit status
make[3]: *** [Testing/CMakeFiles/itkThinPlateSplineTransformPerformanceTest.dir/build.make:224: bin/itkThinPlateSplineTransformPerformanceTest] Error 1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make[2]: *** [CMakeFiles/Makefile2:6292: Testing/CMakeFiles/itkThinPlateSplineTransformPerformanceTest.dir/all] Error 2
make[2]: *** Waiting for unfinished jobs....
[ 36%] Building CXX object Core/CMakeFiles/elxCore.dir/Install/elxComponentDatabase.cxx.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Core && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/x86_64-linux-gnu -I/usr/include/nifti -I/usr/include/double-conversion -I/<<PKGBUILDDIR>>/Common -I/<<PKGBUILDDIR>>/Common/CostFunctions -I/<<PKGBUILDDIR>>/Common/ImageSamplers -I/<<PKGBUILDDIR>>/Common/LineSearchOptimizers -I/<<PKGBUILDDIR>>/Common/ParameterFileParser -I/<<PKGBUILDDIR>>/Common/Transforms -I/<<PKGBUILDDIR>>/Common/xout -I/<<PKGBUILDDIR>>/Common/MevisDicomTiff -I/<<PKGBUILDDIR>>/Core -I/<<PKGBUILDDIR>>/Core/Install -I/<<PKGBUILDDIR>>/Core/Kernel -I/<<PKGBUILDDIR>>/Core/ComponentBaseClasses -I/<<PKGBUILDDIR>>/Core/Configuration -I/<<PKGBUILDDIR>>/Core/Main -I/<<PKGBUILDDIR>>/Components/FixedImagePyramids -I/<<PKGBUILDDIR>>/Components/ImageSamplers -I/<<PKGBUILDDIR>>/Components/Interpolators -I/<<PKGBUILDDIR>>/Components/Metrics -I/<<PKGBUILDDIR>>/Components/MovingImagePyramids -I/<<PKGBUILDDIR>>/Components/Optimizers -I/<<PKGBUILDDIR>>/Components/Registrations -I/<<PKGBUILDDIR>>/Components/ResampleInterpolators -I/<<PKGBUILDDIR>>/Components/Resamplers -I/<<PKGBUILDDIR>>/Components/Transforms -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -isystem /usr/include/gdcm-2.8 -isystem /usr/include/ITK-4.12 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -o CMakeFiles/elxCore.dir/Install/elxComponentDatabase.cxx.o -c /<<PKGBUILDDIR>>/Core/Install/elxComponentDatabase.cxx
[ 36%] Linking CXX executable ../bin/itkThinPlateSplineTransformTest
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Testing && /usr/bin/cmake -E cmake_link_script CMakeFiles/itkThinPlateSplineTransformTest.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -lniftiio -rdynamic CMakeFiles/itkThinPlateSplineTransformTest.dir/itkThinPlateSplineTransformTest.cxx.o CMakeFiles/itkThinPlateSplineTransformTest.dir/itkCommandLineArgumentParser.cxx.o -o ../bin/itkThinPlateSplineTransformTest ../bin/libparam-4.9.a ../bin/libmevisdcmtiff-4.9.a -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/x86_64-linux-gnu/libi2d.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg8.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg12.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg16.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcmr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmrt.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmseg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmtract.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.14.3.6.4 /usr/lib/libITKDeprecated-4.12.so.1 /usr/lib/libITKIOLSM-4.12.so.1 -lexpat /usr/lib/libITKIOMesh-4.12.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOCSV-4.12.so.1 /usr/lib/libITKIOHDF5-4.12.so.1 /usr/lib/libITKIOMRC-4.12.so.1 /usr/lib/libITKOptimizersv4-4.12.so.1 /usr/lib/libITKReview-4.12.so.1 /usr/lib/libITKVideoIO-4.12.so.1 -lCharLS /usr/lib/x86_64-linux-gnu/libdcmtls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmsr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmimage.so.14.3.6.4 -ljpeg -lpng -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.14.3.6.4 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmnet.so.14.3.6.4 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmfg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmiod.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmdata.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/liboflog.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libofstd.so.14.3.6.4 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.12.so.1 /usr/lib/libITKgiftiio-4.12.so.1 -lexpat /usr/lib/libITKIOBMP-4.12.so.1 /usr/lib/libITKIOGDCM-4.12.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.2.8.8 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.2.8.8 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.2.8.8 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.2.8.8 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.2.8.8 /usr/lib/libITKIOGIPL-4.12.so.1 /usr/lib/libITKIOJPEG-4.12.so.1 /usr/lib/libITKIOMeta-4.12.so.1 /usr/lib/libITKIONIFTI-4.12.so.1 /usr/lib/libITKIONRRD-4.12.so.1 /usr/lib/libITKNrrdIO-4.12.so.1 /usr/lib/libITKIOPNG-4.12.so.1 /usr/lib/libITKIOTIFF-4.12.so.1 /usr/lib/libITKIOVTK-4.12.so.1 /usr/lib/libITKLabelMap-4.12.so.1 /usr/lib/libITKQuadEdgeMesh-4.12.so.1 /usr/lib/libITKPolynomials-4.12.so.1 /usr/lib/libITKBiasCorrection-4.12.so.1 /usr/lib/libITKBioCell-4.12.so.1 /usr/lib/libITKFFT-4.12.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.12.so.1 /usr/lib/libITKIOStimulate-4.12.so.1 /usr/lib/libITKIOSpatialObjects-4.12.so.1 /usr/lib/libITKIOXML-4.12.so.1 /usr/lib/libITKFEM-4.12.so.1 /usr/lib/libITKMetaIO-4.12.so.1 -lz /usr/lib/libITKOptimizers-4.12.so.1 /usr/lib/libITKIOGE-4.12.so.1 /usr/lib/libITKIOSiemens-4.12.so.1 /usr/lib/libITKIOIPL-4.12.so.1 /usr/lib/libITKIOTransformHDF5-4.12.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.12.so.1 /usr/lib/libITKIOTransformMatlab-4.12.so.1 /usr/lib/libITKIOTransformBase-4.12.so.1 /usr/lib/libITKTransformFactory-4.12.so.1 /usr/lib/libITKKLMRegionGrowing-4.12.so.1 /usr/lib/libITKVTK-4.12.so.1 /usr/lib/libITKWatersheds-4.12.so.1 /usr/lib/libITKStatistics-4.12.so.1 /usr/lib/libitkNetlibSlatec-4.12.so.1 /usr/lib/libITKSpatialObjects-4.12.so.1 /usr/lib/libITKMesh-4.12.so.1 /usr/lib/libITKTransform-4.12.so.1 /usr/lib/libITKPath-4.12.so.1 /usr/lib/libitkopenjpeg-4.12.so.1 /usr/lib/libITKIOImageBase-4.12.so.1 /usr/lib/libITKVideoCore-4.12.so.1 /usr/lib/libITKCommon-4.12.so.1 /usr/lib/libitksys-4.12.so.1 /usr/lib/libITKVNLInstantiation-4.12.so.1 /usr/lib/libitkvnl_algo-4.12.so.1 /usr/lib/libitkvnl-4.12.so.1 /usr/lib/libitkv3p_netlib-4.12.so.1 /usr/lib/libitknetlib-4.12.so.1 /usr/lib/libitkvcl-4.12.so.1 -lm -lpthread -ldl -lm
[ 36%] Building CXX object Testing/CMakeFiles/itkAdvancedLinearInterpolatorTest.dir/itkCommandLineArgumentParser.cxx.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/x86_64-linux-gnu -I/usr/include/nifti -I/usr/include/double-conversion -I/<<PKGBUILDDIR>>/Common -I/<<PKGBUILDDIR>>/Common/CostFunctions -I/<<PKGBUILDDIR>>/Common/ImageSamplers -I/<<PKGBUILDDIR>>/Common/LineSearchOptimizers -I/<<PKGBUILDDIR>>/Common/ParameterFileParser -I/<<PKGBUILDDIR>>/Common/Transforms -I/<<PKGBUILDDIR>>/Common/xout -I/<<PKGBUILDDIR>>/Common/MevisDicomTiff -I/<<PKGBUILDDIR>>/Core -I/<<PKGBUILDDIR>>/Core/Install -I/<<PKGBUILDDIR>>/Core/Kernel -I/<<PKGBUILDDIR>>/Core/ComponentBaseClasses -I/<<PKGBUILDDIR>>/Core/Configuration -I/<<PKGBUILDDIR>>/Core/Main -I/<<PKGBUILDDIR>>/Components/FixedImagePyramids -I/<<PKGBUILDDIR>>/Components/ImageSamplers -I/<<PKGBUILDDIR>>/Components/Interpolators -I/<<PKGBUILDDIR>>/Components/Metrics -I/<<PKGBUILDDIR>>/Components/MovingImagePyramids -I/<<PKGBUILDDIR>>/Components/Optimizers -I/<<PKGBUILDDIR>>/Components/Registrations -I/<<PKGBUILDDIR>>/Components/ResampleInterpolators -I/<<PKGBUILDDIR>>/Components/Resamplers -I/<<PKGBUILDDIR>>/Components/Transforms -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -isystem /usr/include/gdcm-2.8 -isystem /usr/include/ITK-4.12 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -o CMakeFiles/itkAdvancedLinearInterpolatorTest.dir/itkCommandLineArgumentParser.cxx.o -c /<<PKGBUILDDIR>>/Testing/itkCommandLineArgumentParser.cxx
/usr/bin/ld: /usr/lib/libITKgiftiio-4.12.so.1: undefined reference to `compress2'
/usr/bin/ld: /usr/lib/libITKgiftiio-4.12.so.1: undefined reference to `uncompress'
/usr/bin/ld: /usr/lib/libITKgiftiio-4.12.so.1: undefined reference to `nifti_datatype_to_string'
collect2: error: ld returned 1 exit status
make[3]: *** [Testing/CMakeFiles/itkThinPlateSplineTransformTest.dir/build.make:224: bin/itkThinPlateSplineTransformTest] Error 1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make[2]: *** [CMakeFiles/Makefile2:6330: Testing/CMakeFiles/itkThinPlateSplineTransformTest.dir/all] Error 2
[ 37%] Building CXX object Core/CMakeFiles/elxCore.dir/Install/elxBaseComponent.cxx.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Core && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/x86_64-linux-gnu -I/usr/include/nifti -I/usr/include/double-conversion -I/<<PKGBUILDDIR>>/Common -I/<<PKGBUILDDIR>>/Common/CostFunctions -I/<<PKGBUILDDIR>>/Common/ImageSamplers -I/<<PKGBUILDDIR>>/Common/LineSearchOptimizers -I/<<PKGBUILDDIR>>/Common/ParameterFileParser -I/<<PKGBUILDDIR>>/Common/Transforms -I/<<PKGBUILDDIR>>/Common/xout -I/<<PKGBUILDDIR>>/Common/MevisDicomTiff -I/<<PKGBUILDDIR>>/Core -I/<<PKGBUILDDIR>>/Core/Install -I/<<PKGBUILDDIR>>/Core/Kernel -I/<<PKGBUILDDIR>>/Core/ComponentBaseClasses -I/<<PKGBUILDDIR>>/Core/Configuration -I/<<PKGBUILDDIR>>/Core/Main -I/<<PKGBUILDDIR>>/Components/FixedImagePyramids -I/<<PKGBUILDDIR>>/Components/ImageSamplers -I/<<PKGBUILDDIR>>/Components/Interpolators -I/<<PKGBUILDDIR>>/Components/Metrics -I/<<PKGBUILDDIR>>/Components/MovingImagePyramids -I/<<PKGBUILDDIR>>/Components/Optimizers -I/<<PKGBUILDDIR>>/Components/Registrations -I/<<PKGBUILDDIR>>/Components/ResampleInterpolators -I/<<PKGBUILDDIR>>/Components/Resamplers -I/<<PKGBUILDDIR>>/Components/Transforms -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -isystem /usr/include/gdcm-2.8 -isystem /usr/include/ITK-4.12 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -o CMakeFiles/elxCore.dir/Install/elxBaseComponent.cxx.o -c /<<PKGBUILDDIR>>/Core/Install/elxBaseComponent.cxx
[ 37%] Building CXX object Core/CMakeFiles/elxCore.dir/Configuration/elxConfiguration.cxx.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Core && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/x86_64-linux-gnu -I/usr/include/nifti -I/usr/include/double-conversion -I/<<PKGBUILDDIR>>/Common -I/<<PKGBUILDDIR>>/Common/CostFunctions -I/<<PKGBUILDDIR>>/Common/ImageSamplers -I/<<PKGBUILDDIR>>/Common/LineSearchOptimizers -I/<<PKGBUILDDIR>>/Common/ParameterFileParser -I/<<PKGBUILDDIR>>/Common/Transforms -I/<<PKGBUILDDIR>>/Common/xout -I/<<PKGBUILDDIR>>/Common/MevisDicomTiff -I/<<PKGBUILDDIR>>/Core -I/<<PKGBUILDDIR>>/Core/Install -I/<<PKGBUILDDIR>>/Core/Kernel -I/<<PKGBUILDDIR>>/Core/ComponentBaseClasses -I/<<PKGBUILDDIR>>/Core/Configuration -I/<<PKGBUILDDIR>>/Core/Main -I/<<PKGBUILDDIR>>/Components/FixedImagePyramids -I/<<PKGBUILDDIR>>/Components/ImageSamplers -I/<<PKGBUILDDIR>>/Components/Interpolators -I/<<PKGBUILDDIR>>/Components/Metrics -I/<<PKGBUILDDIR>>/Components/MovingImagePyramids -I/<<PKGBUILDDIR>>/Components/Optimizers -I/<<PKGBUILDDIR>>/Components/Registrations -I/<<PKGBUILDDIR>>/Components/ResampleInterpolators -I/<<PKGBUILDDIR>>/Components/Resamplers -I/<<PKGBUILDDIR>>/Components/Transforms -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -isystem /usr/include/gdcm-2.8 -isystem /usr/include/ITK-4.12 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -o CMakeFiles/elxCore.dir/Configuration/elxConfiguration.cxx.o -c /<<PKGBUILDDIR>>/Core/Configuration/elxConfiguration.cxx
[ 38%] Linking CXX executable ../bin/itkAdvancedLinearInterpolatorTest
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Testing && /usr/bin/cmake -E cmake_link_script CMakeFiles/itkAdvancedLinearInterpolatorTest.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -lniftiio -rdynamic CMakeFiles/itkAdvancedLinearInterpolatorTest.dir/itkAdvancedLinearInterpolatorTest.cxx.o CMakeFiles/itkAdvancedLinearInterpolatorTest.dir/itkCommandLineArgumentParser.cxx.o -o ../bin/itkAdvancedLinearInterpolatorTest ../bin/libparam-4.9.a ../bin/libmevisdcmtiff-4.9.a -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/x86_64-linux-gnu/libi2d.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg8.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg12.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg16.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcmr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmrt.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmseg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmtract.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.14.3.6.4 /usr/lib/libITKDeprecated-4.12.so.1 /usr/lib/libITKIOLSM-4.12.so.1 -lexpat /usr/lib/libITKIOMesh-4.12.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOCSV-4.12.so.1 /usr/lib/libITKIOHDF5-4.12.so.1 /usr/lib/libITKIOMRC-4.12.so.1 /usr/lib/libITKOptimizersv4-4.12.so.1 /usr/lib/libITKReview-4.12.so.1 /usr/lib/libITKVideoIO-4.12.so.1 -lCharLS /usr/lib/x86_64-linux-gnu/libdcmtls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmsr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmimage.so.14.3.6.4 -ljpeg -lpng -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.14.3.6.4 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmnet.so.14.3.6.4 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmfg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmiod.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmdata.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/liboflog.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libofstd.so.14.3.6.4 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.12.so.1 /usr/lib/libITKgiftiio-4.12.so.1 -lexpat /usr/lib/libITKIOBMP-4.12.so.1 /usr/lib/libITKIOGDCM-4.12.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.2.8.8 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.2.8.8 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.2.8.8 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.2.8.8 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.2.8.8 /usr/lib/libITKIOGIPL-4.12.so.1 /usr/lib/libITKIOJPEG-4.12.so.1 /usr/lib/libITKIOMeta-4.12.so.1 /usr/lib/libITKIONIFTI-4.12.so.1 /usr/lib/libITKIONRRD-4.12.so.1 /usr/lib/libITKNrrdIO-4.12.so.1 /usr/lib/libITKIOPNG-4.12.so.1 /usr/lib/libITKIOTIFF-4.12.so.1 /usr/lib/libITKIOVTK-4.12.so.1 /usr/lib/libITKLabelMap-4.12.so.1 /usr/lib/libITKQuadEdgeMesh-4.12.so.1 /usr/lib/libITKPolynomials-4.12.so.1 /usr/lib/libITKBiasCorrection-4.12.so.1 /usr/lib/libITKBioCell-4.12.so.1 /usr/lib/libITKFFT-4.12.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.12.so.1 /usr/lib/libITKIOStimulate-4.12.so.1 /usr/lib/libITKIOSpatialObjects-4.12.so.1 /usr/lib/libITKIOXML-4.12.so.1 /usr/lib/libITKFEM-4.12.so.1 /usr/lib/libITKMetaIO-4.12.so.1 -lz /usr/lib/libITKOptimizers-4.12.so.1 /usr/lib/libITKIOGE-4.12.so.1 /usr/lib/libITKIOSiemens-4.12.so.1 /usr/lib/libITKIOIPL-4.12.so.1 /usr/lib/libITKIOTransformHDF5-4.12.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.12.so.1 /usr/lib/libITKIOTransformMatlab-4.12.so.1 /usr/lib/libITKIOTransformBase-4.12.so.1 /usr/lib/libITKTransformFactory-4.12.so.1 /usr/lib/libITKKLMRegionGrowing-4.12.so.1 /usr/lib/libITKVTK-4.12.so.1 /usr/lib/libITKWatersheds-4.12.so.1 /usr/lib/libITKStatistics-4.12.so.1 /usr/lib/libitkNetlibSlatec-4.12.so.1 /usr/lib/libITKSpatialObjects-4.12.so.1 /usr/lib/libITKMesh-4.12.so.1 /usr/lib/libITKTransform-4.12.so.1 /usr/lib/libITKPath-4.12.so.1 /usr/lib/libitkopenjpeg-4.12.so.1 /usr/lib/libITKIOImageBase-4.12.so.1 /usr/lib/libITKVideoCore-4.12.so.1 /usr/lib/libITKCommon-4.12.so.1 /usr/lib/libitksys-4.12.so.1 /usr/lib/libITKVNLInstantiation-4.12.so.1 /usr/lib/libitkvnl_algo-4.12.so.1 /usr/lib/libitkvnl-4.12.so.1 /usr/lib/libitkv3p_netlib-4.12.so.1 /usr/lib/libitknetlib-4.12.so.1 /usr/lib/libitkvcl-4.12.so.1 -lm -lpthread -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 38%] Built target itkAdvancedLinearInterpolatorTest
[ 39%] Building CXX object Core/CMakeFiles/elxCore.dir/elxProgressCommand.cxx.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Core && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/x86_64-linux-gnu -I/usr/include/nifti -I/usr/include/double-conversion -I/<<PKGBUILDDIR>>/Common -I/<<PKGBUILDDIR>>/Common/CostFunctions -I/<<PKGBUILDDIR>>/Common/ImageSamplers -I/<<PKGBUILDDIR>>/Common/LineSearchOptimizers -I/<<PKGBUILDDIR>>/Common/ParameterFileParser -I/<<PKGBUILDDIR>>/Common/Transforms -I/<<PKGBUILDDIR>>/Common/xout -I/<<PKGBUILDDIR>>/Common/MevisDicomTiff -I/<<PKGBUILDDIR>>/Core -I/<<PKGBUILDDIR>>/Core/Install -I/<<PKGBUILDDIR>>/Core/Kernel -I/<<PKGBUILDDIR>>/Core/ComponentBaseClasses -I/<<PKGBUILDDIR>>/Core/Configuration -I/<<PKGBUILDDIR>>/Core/Main -I/<<PKGBUILDDIR>>/Components/FixedImagePyramids -I/<<PKGBUILDDIR>>/Components/ImageSamplers -I/<<PKGBUILDDIR>>/Components/Interpolators -I/<<PKGBUILDDIR>>/Components/Metrics -I/<<PKGBUILDDIR>>/Components/MovingImagePyramids -I/<<PKGBUILDDIR>>/Components/Optimizers -I/<<PKGBUILDDIR>>/Components/Registrations -I/<<PKGBUILDDIR>>/Components/ResampleInterpolators -I/<<PKGBUILDDIR>>/Components/Resamplers -I/<<PKGBUILDDIR>>/Components/Transforms -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -isystem /usr/include/gdcm-2.8 -isystem /usr/include/ITK-4.12 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -o CMakeFiles/elxCore.dir/elxProgressCommand.cxx.o -c /<<PKGBUILDDIR>>/Core/elxProgressCommand.cxx
[ 39%] Linking CXX static library ../bin/libelxCore-4.9.a
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Core && /usr/bin/cmake -P CMakeFiles/elxCore.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Core && /usr/bin/cmake -E cmake_link_script CMakeFiles/elxCore.dir/link.txt --verbose=1
/usr/bin/ar qc ../bin/libelxCore-4.9.a CMakeFiles/elxCore.dir/Kernel/elxElastixBase.cxx.o CMakeFiles/elxCore.dir/Install/elxComponentDatabase.cxx.o CMakeFiles/elxCore.dir/Install/elxBaseComponent.cxx.o CMakeFiles/elxCore.dir/Configuration/elxConfiguration.cxx.o CMakeFiles/elxCore.dir/elxProgressCommand.cxx.o
/usr/bin/ranlib ../bin/libelxCore-4.9.a
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 39%] Built target elxCore
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make[1]: *** [Makefile:144: all] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
dh_auto_build: cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" returned exit code 2
make: *** [debian/rules:12: binary-arch] Error 2
dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2
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