[Debian-med-packaging] Bug#925693: gdcm: ftbfs with GCC-9

[Matthias Klose]

Package: src:gdcm
Version: 2.8.8-7
Severity: normal
Tags: sid bullseye
User: debian-gcc at lists.debian.org
Usertags: ftbfs-gcc-9

Please keep this issue open in the bug tracker for the package it
was filed for.  If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.

The package fails to build in a test rebuild on at least amd64 with
gcc-9/g++-9, but succeeds to build with gcc-8/g++-8. The
severity of this report will be raised before the bullseye release,
so nothing has to be done for the buster release.

The full build log can be found at:
http://people.debian.org/~doko/logs/gcc9-20190321/gdcm_2.8.8-7_unstable_gcc9.log
The last lines of the build log are at the end of this report.

To build with GCC 9, either set CC=gcc-9 CXX=g++-9 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.

  apt-get -t=experimental install g++ 

Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-9/porting_to.html

GCC 9 also passes the linker option --as-needed by default; typical
build issues are passing libraries before object files to the linker,
or underlinking of convenience libraries built from the same source.

[...]
@@ -91,6 +92,8 @@
  _ZN12vtkAlgorithm19GetProgressObserverEv at Base 2.8.7
  (arch-bits=32)_ZN12vtkCellArray14InsertNextCellEiPKi at Base 2.8.7
  (optional|arch-bits=64)_ZN12vtkCellArray14InsertNextCellExPKx at Base 2.8.7
+ _ZN12vtkCellArray16GetNumberOfCellsEv at Base 2.8.8-7
+ _ZN12vtkDataArray14GetLookupTableEv at Base 2.8.8-7
  _ZN12vtkImageData10GetSpacingEv at Base 2.8.7-2~
  _ZN12vtkImageData17GetNumberOfPointsEv at Base 2.8.7
  _ZN12vtkImageData9GetExtentEPi at Base 2.8.7
@@ -261,6 +264,8 @@
  _ZN15vtkImageReader231SetDataScalarTypeToUnsignedCharEv at Base 2.8.7
  _ZN15vtkImageReader232SetDataScalarTypeToUnsignedShortEv at Base 2.8.7
  _ZN15vtkRenderWindow17SetNumberOfLayersEi at Base 2.8.7
+ _ZN16vtkAbstractArray21SetNumberOfComponentsEi at Base 2.8.8-7
+ _ZN16vtkAbstractArray7SetNameEPKc at Base 2.8.8-7
  _ZN16vtkImageRGBToYBR15ThreadedExecuteEP12vtkImageDataS1_Pii at Base 2.8.7
  _ZN16vtkImageRGBToYBR3IsAEPKc at Base 2.8.7
  _ZN16vtkImageRGBToYBR3NewEv at Base 2.8.7
@@ -480,15 +485,15 @@
  _ZN19vtkGDCMImageReader2D0Ev at Base 2.8.7
  _ZN19vtkGDCMImageReader2D1Ev at Base 2.8.7
  _ZN19vtkGDCMImageReader2D2Ev at Base 2.8.7
- (optional)_ZN19vtkGenericDataArrayI23vtkAOSDataArrayTemplateIhEhE11DataChangedEv at Base 2.8.8-6
- (optional)_ZN19vtkGenericDataArrayI23vtkAOSDataArrayTemplateIhEhE17SetNumberOfTuplesEx at Base 2.8.8-6
- (optional)_ZN19vtkGenericDataArrayI23vtkAOSDataArrayTemplateIhEhE8AllocateExx at Base 2.8.8-6
+#MISSING: 2.8.8-7# (optional)_ZN19vtkGenericDataArrayI23vtkAOSDataArrayTemplateIhEhE11DataChangedEv at Base 2.8.8-6
+#MISSING: 2.8.8-7# (optional)_ZN19vtkGenericDataArrayI23vtkAOSDataArrayTemplateIhEhE17SetNumberOfTuplesEx at Base 2.8.8-6
+#MISSING: 2.8.8-7# (optional)_ZN19vtkGenericDataArrayI23vtkAOSDataArrayTemplateIhEhE8AllocateExx at Base 2.8.8-6
  (arch-bits=32)_ZN19vtkGenericDataArrayI23vtkAOSDataArrayTemplateIiEiE11InsertValueEii at Base 2.8.7-2~
  (arch-bits=32)_ZN19vtkGenericDataArrayI23vtkAOSDataArrayTemplateIiEiE19EnsureAccessToTupleEi at Base 2.8.7-2~
- (optional)_ZN19vtkGenericDataArrayI23vtkAOSDataArrayTemplateItEtE11DataChangedEv at Base 2.8.8-6
- (optional)_ZN19vtkGenericDataArrayI23vtkAOSDataArrayTemplateItEtE17SetNumberOfTuplesEx at Base 2.8.8-6
- (optional)_ZN19vtkGenericDataArrayI23vtkAOSDataArrayTemplateItEtE21SetNumberOfComponentsEi at Base 2.8.8-6
- (optional)_ZN19vtkGenericDataArrayI23vtkAOSDataArrayTemplateItEtE8AllocateExx at Base 2.8.8-6
+#MISSING: 2.8.8-7# (optional)_ZN19vtkGenericDataArrayI23vtkAOSDataArrayTemplateItEtE11DataChangedEv at Base 2.8.8-6
+#MISSING: 2.8.8-7# (optional)_ZN19vtkGenericDataArrayI23vtkAOSDataArrayTemplateItEtE17SetNumberOfTuplesEx at Base 2.8.8-6
+#MISSING: 2.8.8-7# (optional)_ZN19vtkGenericDataArrayI23vtkAOSDataArrayTemplateItEtE21SetNumberOfComponentsEi at Base 2.8.8-6
+#MISSING: 2.8.8-7# (optional)_ZN19vtkGenericDataArrayI23vtkAOSDataArrayTemplateItEtE8AllocateExx at Base 2.8.8-6
  (arch-bits=64)_ZN19vtkGenericDataArrayI23vtkAOSDataArrayTemplateIxExE11InsertValueExx at Base 2.8.7-2~
  (optional|arch-bits=64)_ZN19vtkGenericDataArrayI23vtkAOSDataArrayTemplateIxExE19EnsureAccessToTupleEx at Base 2.8.7-2~
  _ZN19vtkIOImage_AutoInitD1Ev at Base 2.8.7
@@ -867,7 +872,7 @@
  _ZN4gdcm12SmartPointerINS_5ValueEEaSEPS1_ at Base 2.8.7
  _ZN4gdcm20BitmapToBitmapFilterD1Ev at Base 2.8.7
  _ZN4gdcm20BitmapToBitmapFilterD2Ev at Base 2.8.7
- (optional)_ZN4gdcm22EncodingImplementationILi74550907EE4ReadINS_6StringILc92ELj16ELc32EEEEEvPT_mRSi at Base 2.8.7
+#MISSING: 2.8.8-7# (optional)_ZN4gdcm22EncodingImplementationILi74550907EE4ReadINS_6StringILc92ELj16ELc32EEEEEvPT_mRSi at Base 2.8.7
  (optional)_ZN4gdcm22EncodingImplementationILi74550907EE4ReadINS_6StringILc92ELj64ELc0EEEEEvPT_mRSi at Base 2.8.7
  (optional)_ZN4gdcm22EncodingImplementationILi74550907EE4ReadINS_6StringILc92ELj64ELc32EEEEEvPT_mRSi at Base 2.8.7
  _ZN4gdcm22EncodingImplementationILi74550907EE4ReadIdEEvPT_mRSi at Base 2.8.7
@@ -888,12 +893,12 @@
  _ZN4gdcm8FilenameD2Ev at Base 2.8.7
  _ZN4gdcm9ByteValueC1EPKcRKNS_2VLE at Base 2.8.7
  _ZN4gdcm9ByteValueC2EPKcRKNS_2VLE at Base 2.8.7
- (optional)_ZN4gdcm9ByteValueD0Ev at Base 2.8.8-6
- (optional)_ZN4gdcm9ByteValueD1Ev at Base 2.8.8-6
- (optional)_ZN4gdcm9ByteValueD2Ev at Base 2.8.8-6
+#MISSING: 2.8.8-7# (optional)_ZN4gdcm9ByteValueD0Ev at Base 2.8.8-6
+#MISSING: 2.8.8-7# (optional)_ZN4gdcm9ByteValueD1Ev at Base 2.8.8-6
+#MISSING: 2.8.8-7# (optional)_ZN4gdcm9ByteValueD2Ev at Base 2.8.8-6
  _ZN4gdcm9to_stringIdEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEET_ at Base 2.8.7
  (arch=any-amd64 arm64)_ZN4gdcmlsERSoRKNS_11DataElementE at Base 2.8.7
- _ZN4gdcmlsERSoRKNS_3TagE at Base 2.8.7
+#MISSING: 2.8.8-7# _ZN4gdcmlsERSoRKNS_3TagE at Base 2.8.7
  _ZN7vtkProp13GetVisibilityEv at Base 2.8.7
  _ZN7vtkProp13SetVisibilityEi at Base 2.8.7
  _ZN9vtkCamera11GetPositionEv at Base 2.8.7
dh_makeshlibs: failing due to earlier errors
make: *** [debian/rules:49: binary-arch] Error 2
dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2