[Debian-med-packaging] Bug#920545: python-intervaltree breaks python-intervaltree-bio autopkgtest

[Andreas Tille]

Hi Graham,

On Thu, Mar 28, 2019 at 04:58:38PM +0200, Graham Inggs wrote:
> Hi Olivier
> 
> On 2019/03/09 17:56, olivier sallou wrote:
> > I have pushed a fix to get autopkgtests done in python-intervaltree-bio
> > I have not uploaded package, as we are in freeze transition, so patch is in
> > git only
> > Commit: 4f67ea8b607fa47520b553ce8776a37cf62a1713
> > Link:
> > https://salsa.debian.org/med-team/python-intervaltree-bio/commit/4f67ea8b607fa47520b553ce8776a37cf62a1713
> 
> I've just uploaded python-intervaltree-bio including this patch to Ubuntu
> and confirm that it fixes the autopkgtest there.

I'm using a pbuilder hook to build packages and get:

autopkgtest [07:19:35]: test command2:  python3 -m pytest --ignore=.pc --verbose --datadir debian/data
autopkgtest [07:19:35]: test command2: [-----------------------
ImportError while loading conftest '/tmp/autopkgtest.chaq95/tree/conftest.py'.
py._path.local.LocalPath.ImportMismatchError: ('conftest', '/build/python-intervaltree-bio-1.0.1/conftest.py', local('/tmp/autopkgtest.chaq95/tree/conftest.py'))
autopkgtest [07:19:36]: test command2: -----------------------]
autopkgtest [07:19:36]: test command2:  - - - - - - - - - - results - - - - - - - - - -
command2             FAIL non-zero exit status 4
autopkgtest [07:19:36]: test command2:  - - - - - - - - - - stderr - - - - - - - - - -
ImportError while loading conftest '/tmp/autopkgtest.chaq95/tree/conftest.py'.
py._path.local.LocalPath.ImportMismatchError: ('conftest', '/build/python-intervaltree-bio-1.0.1/conftest.py', local('/tmp/autopkgtest.chaq95/tree/conftest.py'))
autopkgtest [07:19:36]: @@@@@@@@@@@@@@@@@@@@ summary
command1             FAIL non-zero exit status 4
command2             FAIL non-zero exit status 4
autopkgtest [07:19:36]: Binaries: resetting testbed apt configuration


with the current state in Git.  Are you sure you have exactly the status
from Git (now head at 86cc4e0eafcc1cd2e2916ecf7c476495f5c16f1f - but I
simply added myself to Uploaders - no change to test).

 
> python-intervaltree should get "Breaks: python-intervaltree-bio (<<
> 1.0.1-4)" or similar added.

That should probably be a separate bug report.

Kind regards

         Andreas.

-- 
http://fam-tille.de