[Debian-med-packaging] Bug#944788: ITP: resfinder-db -- ResFinder database is a curated database of acquired resistance genes
Andreas Tille
tille at debian.org
Fri Nov 15 11:55:54 GMT 2019
Package: wnpp
Severity: wishlist
Subject: ITP: resfinder-db -- ResFinder database is a curated database of acquired resistance genes
Package: wnpp
Owner: Andreas Tille <tille at debian.org>
Severity: wishlist
* Package name : resfinder-db
Version : 0.0+git20191001.149209d
Upstream Author : Ole Lund, Technical University of Denmark
* URL : https://bitbucket.org/genomicepidemiology/resfinder
* License : Apache-2.0
Programming Lang: Python
Description : ResFinder database is a curated database of acquired resistance genes
ResFinder identifies acquired antimicrobial resistance genes in total or
partial sequenced isolates of bacteria.
.
ResFinder that uses BLAST for identification of acquired antimicrobial
resistance genes in whole-genome data. As input, the method can use both
pre-assembled, complete or partial genomes, and short sequence reads
from four different sequencing platforms. The method was evaluated on
1862 GenBank files containing 1411 different resistance genes, as well
as on 23 de-novo-sequenced isolates.
.
This package provides the database needed for resfinder.
Remark: This package is maintained by Debian Med Packaging Team at
https://salsa.debian.org/med-team/resfinder-db
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