[Debian-med-packaging] debian-med_3.4_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

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Hash: SHA512

Format: 1.8
Date: Sat, 05 Oct 2019 12:02:38 +0200
Source: debian-med
Architecture: source
Version: 3.4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Andreas Tille <tille at debian.org>
Changes:
 debian-med (3.4) unstable; urgency=medium
 .
   * Standards-Version: 4.4.1
   * Use debhelper-compat
   * Re-render dependencies without Python2 packages
 .
   * start of automatic changelog entry *
 .
   * Changes in metapackage dependencies
    -med-bio
     added:
       Recommends:  python3-deeptoolsintervals, skesa, python3-orange, vg,
                    mmseqs2, mindthegap, kaptive, r-cran-tsne,
                    python3-deeptools, r-cran-seurat, python3-cogent,
                    kleborate, python3-reaper, python3-treetime, pizzly,
                    trim-galore, pigx-scrnaseq, pigx-rnaseq,
                    r-bioc-multiassayexperiment, wham-align, r-other-wgcna,
                    r-bioc-mofa, seqcluster, r-cran-kaos, r-cran-drinsight
       Suggests:  r-bioc-tximport, r-bioc-qusage, python3-pyflow,
                  python3-alignlib, r-cran-corrplot, r-cran-fitdistrplus,
                  r-cran-dynamictreecut, python3-loompy, strelka,
                  r-cran-gprofiler, python3-py2bit, r-cran-sctransform
     removed:
       Recommends:  python-orange, python-treetime, python-reaper, python-cogent
    -med-bio-dev
     added:
       Recommends:  python3-roadrunner, python3-deeptoolsintervals,
                    r-other-hms-dbmi-spp, python3-loompy, python3-py2bit,
                    r-cran-rotl, r-cran-seqinr, libseqan2-dev, r-cran-boolnet,
                    r-other-apmswapp, r-cran-vegan, r-cran-tsne, gffread,
                    python3-deeptools, r-cran-seurat, r-cran-corrplot,
                    r-cran-fitdistrplus, r-cran-qqman, r-cran-metamix,
                    r-cran-pscbs, r-cran-pheatmap, r-cran-sctransform,
                    r-cran-adephylo, r-cran-phangorn, r-cran-distory,
                    python3-htseq, libmaus2-dev, python3-rdkit, r-cran-samr,
                    r-cran-webgestaltr, python3-freecontact, libseqan3-dev,
                    r-cran-rentrez, r-cran-adegenet, r-cran-dynamictreecut,
                    r-cran-gprofiler, r-cran-forecast, libgclib,
                    python3-biom-format, r-cran-drinsight
       Suggests:  r-cran-rann, r-bioc-biostrings, r-bioc-deseq2,
                  r-bioc-mergeomics, r-cran-metap, r-bioc-qusage,
                  python3-pyflow, python3-pycosat, r-bioc-metagenomeseq,
                  r-bioc-annotate, r-bioc-cner, r-bioc-geneplotter,
                  r-bioc-ensembldb, r-bioc-rentrez, r-bioc-tximport,
                  r-bioc-rtracklayer, r-bioc-annotationhub, r-bioc-ebseq,
                  r-bioc-go.db, r-bioc-limma, r-cran-ica, r-bioc-pcamethods,
                  r-bioc-savr, r-cran-rsvd, python3-alignlib,
                  r-cran-future.batchtools, r-bioc-tfbstools, r-bioc-bitseq,
                  r-bioc-cummerbund, r-bioc-multiassayexperiment, r-bioc-gviz,
                  r-bioc-genefilter, r-bioc-phyloseq, r-bioc-impute,
                  r-bioc-aroma.light, r-cran-future.apply, r-bioc-mofa,
                  r-bioc-dnacopy
     removed:
       Recommends:  python-htseq, python-mmtk, python-rdkit, python-screed,
                    python-biom-format, python-roadrunner, python-freecontact
       Suggests:  python-pyflow, r-cran-rentrez
    -med-bio-ngs
     added:
       Recommends:  wham-align
    -med-cloud
     removed:
       Recommends:  python-biopython
    -med-data
     added:
       Recommends:  python3-hl7
       Suggests:  oscar
     removed:
       Recommends:  python-hl7
    -med-epi
     added:
       Recommends:  python3-treetime
     removed:
       Recommends:  python-treetime
    -med-imaging
     added:
       Recommends:  python3-nibabel, python3-mvpa2, python3-dicom,
                    python3-surfer, tifffile
     removed:
       Recommends:  python-surfer, python-mvpa2, python-dicom,
                    python-nibabel, python-tifffile
    -med-imaging-dev
     added:
       Recommends:  python3-mia, python3-mvpa2, python3-dicom,
                    python3-openslide, python3-gdcm, python3-imageio,
                    python3-mne, python3-nibabel
       Suggests:  tifffile
     removed:
       Recommends:  python-mia | python3-mia, python-gdcm, python-mne,
                    python-mvpa2, python-dicom, python-nibabel,
                    python-imageio, python-openslide
       Suggests:  python-libavg, python-tifffile
    -med-physics
     added:
       Suggests:  python3-multipletau
     removed:
       Suggests:  python-multipletau
    -med-practice
     added:
       Recommends:  oscar
    -med-psychology
     removed:
       Suggests:  python-visionegg
    -med-tools
     added:
       Recommends:  python3-fitbit
       Suggests:  oscar
     removed:
       Recommends:  python-clips, python-fitbit
Checksums-Sha1:
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 e4f43be388d4fcf0252f9933056ef6b745478fa7 105304 debian-med_3.4.tar.xz
 16577e465b948507b24c9a1777d5fadf4883bb98 11458 debian-med_3.4_amd64.buildinfo
Checksums-Sha256:
 63d4f1abd7c173956cec9a6035eeb1be8e5aa24851425e2d1a16ede336bf2f83 2929 debian-med_3.4.dsc
 5b51b9c4751ee6f3c0f70be4498303836f6b285ecb75eef3340fb7f6db46c7f4 105304 debian-med_3.4.tar.xz
 d5189c3c73dc270245641f1a42f63b468a08570be4bbeea4afaa08ec4535769a 11458 debian-med_3.4_amd64.buildinfo
Files:
 4d4766a6f68d5bf8657753361dec0a55 2929 misc optional debian-med_3.4.dsc
 e9e462a10573b714daa72e812b9c4f81 105304 misc optional debian-med_3.4.tar.xz
 acde9f033ae4f1ff55e2d6b807465645 11458 misc optional debian-med_3.4_amd64.buildinfo

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