[Debian-med-packaging] Bug#939894: minia: autopkgtest regression: X.contigs.fa: No such file or directory

[Paul Gevers]

Source: minia
Version: 3.2.1-1
X-Debbugs-CC: debian-ci at lists.debian.org
User: debian-ci at lists.debian.org
Usertags: regression

Dear maintainers,

With a recent upload of minia the autopkgtest of minia fails in testing
when that autopkgtest is run with the binary packages of minia from
unstable. It passes when run with only packages from testing. In tabular
form:
                       pass            fail
minia                  from testing    3.2.1-1
all others             from testing    from testing

I copied some of the output at the bottom of this report.

Currently this regression is blocking the migration to testing [1]. Can
you please investigate the situation and fix it? If needed, please
change the bug's severity.

More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation

Paul
PS: your package FTBFS on 3 architectures because of BD not available.
This *also* blocks migration.

[1] https://qa.debian.org/excuses.php?package=minia

https://ci.debian.net/data/autopkgtest/testing/amd64/m/minia/2914535/log.gz

autopkgtest [20:11:12]: test run-unit-test: [-----------------------
************ Run simple_test.sh ****************
Traceback (most recent call last):
  File "compare_fasta.py", line 21, in <module>
    s2 = read_seqs(fasta2)
  File "compare_fasta.py", line 15, in read_seqs
    for  line in open(fasta):
IOError: [Errno 2] No such file or directory: 'X.contigs.fa'
has a known issue where the AAAA node gets repeated a few times, so it
should print NOT EQUAL. But should print '6', now:
grep: X.contigs.fa: No such file or directory
  0
FAILED
autopkgtest [20:11:12]: test run-unit-test: -----------------------]

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