[Debian-med-packaging] Bug#923731: Any volunteer to fix the "usual" issues when upgrading to new version of igv?

[Andreas Tille]

Hi,

I upgraded the igv packaging Git[1] to the latest upstream version.  I
never experienced a smooth upgrade to any igv version - but I always
experienced help from a Java expert here on the list.  May be it is time
again to fix:



All input files are considered out-of-date for incremental task ':compileJava'.
Compiling with JDK Java compiler API.
/build/igv-2.6.3+dfsg/src/main/java11/module-info.java:7: error: module not found: ant
    requires ant;
             ^
/build/igv-2.6.3+dfsg/src/main/java11/module-info.java:8: error: module not found: com.google.common
    requires com.google.common;
                       ^
/build/igv-2.6.3+dfsg/src/main/java11/module-info.java:9: error: module not found: commons.io
    requires commons.io;
                    ^
/build/igv-2.6.3+dfsg/src/main/java11/module-info.java:10: error: module not found: commons.math
    requires commons.math;
                    ^
/build/igv-2.6.3+dfsg/src/main/java11/module-info.java:12: error: module not found: gson
    requires gson;
             ^
/build/igv-2.6.3+dfsg/src/main/java11/module-info.java:13: error: module not found: htsjdk
    requires htsjdk;
             ^
/build/igv-2.6.3+dfsg/src/main/java11/module-info.java:22: error: module not found: log4j
    requires log4j;
             ^
/build/igv-2.6.3+dfsg/src/main/java11/module-info.java:23: error: module not found: org.apache.logging.log4j
    requires org.apache.logging.log4j;
                               ^
/build/igv-2.6.3+dfsg/src/main/java11/module-info.java:24: error: module not found: org.apache.logging.log4j.core
    requires org.apache.logging.log4j.core;
                                     ^
/build/igv-2.6.3+dfsg/src/main/java11/module-info.java:25: error: module not found: swing.layout
    requires swing.layout;
                  ^
10 errors
:compileJava FAILED
:compileJava (Thread[Task worker for ':',5,main]) completed. Took 4.782 secs.

FAILURE: Build failed with an exception.


The failures are looking like missing Build-Depends at first look but these
should be OK.  Any volunteer?

Kind regards

       Andreas.


[1] https://salsa.debian.org/med-team/igv

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