[Debian-med-packaging] Bug#923731: Bug#923731: Any volunteer to fix the "usual" issues when upgrading to new version of igv?

[Olivier Sallou]

If I try to remove "module" related stuff as debian required libs do not
seem to declare libs as modules:


dependencies {
    compile fileTree(dir: 'lib', include: '*.jar')
    compile "commons-io:commons-io:debian"
    compile "org.apache.ant:ant:debian";
    compile "org.apache.commons:commons-math:debian";
    compile "com.google.code.gson:gson:debian";
    compile "com.github.samtools:htsjdk:debian";
    compile "log4j:log4j:1.2.x";
    compile "org.apache.logging.log4j:log4j:debian";
    compile "org.apache.logging.log4j:log4j-core:debian";
    compile "org.apache.logging.log4j:log4j-api:debian";
    compile "org.swinglabs:swing-layout:debian";
    compile "com.google.guava:guava:debian";
    compile "org.apache.xmlgraphics:batik-all:debian";

    testCompile fileTree(dir: 'test/lib', include: '*.jar')
}


It ends with other errors:


...

All input files are considered out-of-date for incremental task
':compileJava'.
Compiling with JDK Java compiler API.
error: the unnamed module reads package org.w3c.dom.svg from both
xml.apis.ext.debian and xml.apis.debian
error: the unnamed module reads package org.w3c.dom.smil from both
xml.apis.ext.debian and xml.apis.debian
error: the unnamed module reads package org.w3c.css.sac.helpers from
both xml.apis.ext.debian and xml.apis.debian
error: the unnamed module reads package org.w3c.css.sac from both
xml.apis.ext.debian and xml.apis.debian
error: the unnamed module reads package javax.xml from both
xml.apis.debian and java.xml
error: the unnamed module reads package javax.xml.datatype from both
xml.apis.debian and java.xml


Seems related to a mix of module use and unnamed modules.... but don't
know how to fix that