[Debian-med-packaging] Bug#955566: khmer: autopkgtest regression: undefined references

[Paul Gevers]

Source: khmer
Version: 2.1.2+dfsg-6
X-Debbugs-CC: debian-ci at lists.debian.org
Severity: serious
User: debian-ci at lists.debian.org
Usertags: regression

Dear maintainer(s),

Since 2019-11 the autopkgtest of khmer is failing. I copied some of the
output at the bottom of this report.

More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation

Paul

https://ci.debian.net/data/autopkgtest/unstable/amd64/k/khmer/4760829/log.gz

+ pkg=khmer
+ [ /tmp/autopkgtest-lxc.zxrjb5bi/downtmp/autopkgtest_tmp =  ]
+ cd /tmp/autopkgtest-lxc.zxrjb5bi/downtmp/autopkgtest_tmp
+ pkg-config oxli --static --cflags
+ pkg-config oxli --static --libs
+ c++ -o test-prog-static -static -std=c++11 -I/usr/local/include
-I/usr/include/oxli/smhasher /usr/share/doc/khmer-common/test-compile.cc
-L/usr/local/lib -loxli -lbz2 -lz
+ ./test-prog-static
+ pkg-config oxli --cflags
+ pkg-config oxli --libs
+ c++ -o test-prog-dynamic -std=c++11 -I/usr/local/include
-I/usr/include/oxli/smhasher /usr/share/doc/khmer-common/test-compile.cc
-L/usr/local/lib -loxli
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so:
undefined reference to `gzerror'
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so:
undefined reference to `deflateInit2_'
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so:
undefined reference to `gzeof'
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so:
undefined reference to `deflate'
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so:
undefined reference to `deflateEnd'
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so:
undefined reference to `crc32'
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so:
undefined reference to `inflate'
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so:
undefined reference to `inflateInit2_'
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so:
undefined reference to `gzclearerr'
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so:
undefined reference to `inflateEnd'
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so:
undefined reference to `gzopen64'
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so:
undefined reference to `gzwrite'
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so:
undefined reference to `gzopen'
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so:
undefined reference to `BZ2_bzWriteClose'
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so:
undefined reference to `BZ2_bzReadOpen'
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so:
undefined reference to `BZ2_bzRead'
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so:
undefined reference to `gzdirect'
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so:
undefined reference to `gzclose'
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so:
undefined reference to `gzdopen'
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so:
undefined reference to `gzread'
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so:
undefined reference to `BZ2_bzWriteOpen'
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so:
undefined reference to `BZ2_bzReadClose'
/usr/bin/ld:
/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/liboxli.so:
undefined reference to `gztell64'
collect2: error: ld returned 1 exit status

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