[Debian-med-packaging] Bug#955644: pynwb: FTBFS: ERROR: tests.unit.test_retinotopy (unittest.loader._FailedTest)
Lucas Nussbaum
lucas at debian.org
Fri Apr 3 20:41:48 BST 2020
Source: pynwb
Version: 1.2.1-2
Severity: serious
Justification: FTBFS on amd64
Tags: bullseye sid ftbfs
Usertags: ftbfs-20200402 ftbfs-bullseye
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> debian/rules build
> dh build --with python3 --buildsystem=pybuild
> dh_update_autotools_config -O--buildsystem=pybuild
> dh_autoreconf -O--buildsystem=pybuild
> dh_auto_configure -O--buildsystem=pybuild
> pybuild --configure -i python{version} -p "3.7 3.8"
> I: pybuild base:217: python3.7 setup.py config
> found these packages: ['pynwb', 'pynwb.legacy', 'pynwb.testing', 'pynwb.io', 'pynwb.legacy.io']
> ['h5py>=2.9', 'hdmf>=1.5.4,<2', 'numpy>=1.16', 'pandas>=0.23', 'python-dateutil>=2.7']
> running config
> I: pybuild base:217: python3.8 setup.py config
> found these packages: ['pynwb', 'pynwb.legacy', 'pynwb.testing', 'pynwb.io', 'pynwb.legacy.io']
> ['h5py>=2.9', 'hdmf>=1.5.4,<2', 'numpy>=1.16', 'pandas>=0.23', 'python-dateutil>=2.7']
> running config
> dh_auto_build -O--buildsystem=pybuild
> pybuild --build -i python{version} -p "3.7 3.8"
> I: pybuild base:217: /usr/bin/python3.7 setup.py build
> found these packages: ['pynwb', 'pynwb.legacy', 'pynwb.testing', 'pynwb.io', 'pynwb.legacy.io']
> ['h5py>=2.9', 'hdmf>=1.5.4,<2', 'numpy>=1.16', 'pandas>=0.23', 'python-dateutil>=2.7']
> running build
> running build_py
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb
> copying src/pynwb/validate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb
> copying src/pynwb/ecephys.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb
> copying src/pynwb/core.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb
> copying src/pynwb/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb
> copying src/pynwb/retinotopy.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb
> copying src/pynwb/spec.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb
> copying src/pynwb/image.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb
> copying src/pynwb/misc.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb
> copying src/pynwb/file.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb
> copying src/pynwb/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb
> copying src/pynwb/device.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb
> copying src/pynwb/icephys.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb
> copying src/pynwb/ogen.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb
> copying src/pynwb/ophys.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb
> copying src/pynwb/behavior.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb
> copying src/pynwb/base.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb
> copying src/pynwb/epoch.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/legacy
> copying src/pynwb/legacy/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/legacy
> copying src/pynwb/legacy/map.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/legacy
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/testing
> copying src/pynwb/testing/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/testing
> copying src/pynwb/testing/make_test_files.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/testing
> copying src/pynwb/testing/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/testing
> copying src/pynwb/testing/testh5io.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/testing
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/io
> copying src/pynwb/io/ecephys.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/io
> copying src/pynwb/io/core.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/io
> copying src/pynwb/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/io
> copying src/pynwb/io/retinotopy.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/io
> copying src/pynwb/io/image.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/io
> copying src/pynwb/io/misc.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/io
> copying src/pynwb/io/file.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/io
> copying src/pynwb/io/icephys.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/io
> copying src/pynwb/io/ogen.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/io
> copying src/pynwb/io/ophys.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/io
> copying src/pynwb/io/behavior.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/io
> copying src/pynwb/io/base.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/io
> copying src/pynwb/io/epoch.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/io
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/legacy/io
> copying src/pynwb/legacy/io/ecephys.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/legacy/io
> copying src/pynwb/legacy/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/legacy/io
> copying src/pynwb/legacy/io/retinotopy.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/legacy/io
> copying src/pynwb/legacy/io/image.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/legacy/io
> copying src/pynwb/legacy/io/misc.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/legacy/io
> copying src/pynwb/legacy/io/file.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/legacy/io
> copying src/pynwb/legacy/io/icephys.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/legacy/io
> copying src/pynwb/legacy/io/ogen.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/legacy/io
> copying src/pynwb/legacy/io/ophys.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/legacy/io
> copying src/pynwb/legacy/io/behavior.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/legacy/io
> copying src/pynwb/legacy/io/base.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/legacy/io
> copying src/pynwb/legacy/io/epoch.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/legacy/io
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/nwb-schema
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/nwb-schema/core
> copying src/pynwb/nwb-schema/core/nwb.retinotopy.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/nwb-schema/core
> copying src/pynwb/nwb-schema/core/nwb.epoch.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/nwb-schema/core
> copying src/pynwb/nwb-schema/core/nwb.image.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/nwb-schema/core
> copying src/pynwb/nwb-schema/core/nwb.base.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/nwb-schema/core
> copying src/pynwb/nwb-schema/core/nwb.icephys.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/nwb-schema/core
> copying src/pynwb/nwb-schema/core/nwb.behavior.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/nwb-schema/core
> copying src/pynwb/nwb-schema/core/nwb.ophys.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/nwb-schema/core
> copying src/pynwb/nwb-schema/core/nwb.ecephys.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/nwb-schema/core
> copying src/pynwb/nwb-schema/core/nwb.file.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/nwb-schema/core
> copying src/pynwb/nwb-schema/core/nwb.misc.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/nwb-schema/core
> copying src/pynwb/nwb-schema/core/nwb.namespace.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/nwb-schema/core
> copying src/pynwb/nwb-schema/core/nwb.ogen.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/nwb-schema/core
> UPDATING /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/_version.py
> set /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/_version.py to '1.2.1'
> I: pybuild base:217: /usr/bin/python3 setup.py build
> found these packages: ['pynwb', 'pynwb.legacy', 'pynwb.testing', 'pynwb.io', 'pynwb.legacy.io']
> ['h5py>=2.9', 'hdmf>=1.5.4,<2', 'numpy>=1.16', 'pandas>=0.23', 'python-dateutil>=2.7']
> running build
> running build_py
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb
> copying src/pynwb/validate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb
> copying src/pynwb/ecephys.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb
> copying src/pynwb/core.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb
> copying src/pynwb/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb
> copying src/pynwb/retinotopy.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb
> copying src/pynwb/spec.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb
> copying src/pynwb/image.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb
> copying src/pynwb/misc.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb
> copying src/pynwb/file.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb
> copying src/pynwb/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb
> copying src/pynwb/device.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb
> copying src/pynwb/icephys.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb
> copying src/pynwb/ogen.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb
> copying src/pynwb/ophys.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb
> copying src/pynwb/behavior.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb
> copying src/pynwb/base.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb
> copying src/pynwb/epoch.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/legacy
> copying src/pynwb/legacy/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/legacy
> copying src/pynwb/legacy/map.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/legacy
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/testing
> copying src/pynwb/testing/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/testing
> copying src/pynwb/testing/make_test_files.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/testing
> copying src/pynwb/testing/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/testing
> copying src/pynwb/testing/testh5io.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/testing
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/io
> copying src/pynwb/io/ecephys.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/io
> copying src/pynwb/io/core.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/io
> copying src/pynwb/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/io
> copying src/pynwb/io/retinotopy.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/io
> copying src/pynwb/io/image.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/io
> copying src/pynwb/io/misc.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/io
> copying src/pynwb/io/file.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/io
> copying src/pynwb/io/icephys.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/io
> copying src/pynwb/io/ogen.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/io
> copying src/pynwb/io/ophys.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/io
> copying src/pynwb/io/behavior.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/io
> copying src/pynwb/io/base.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/io
> copying src/pynwb/io/epoch.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/io
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/legacy/io
> copying src/pynwb/legacy/io/ecephys.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/legacy/io
> copying src/pynwb/legacy/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/legacy/io
> copying src/pynwb/legacy/io/retinotopy.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/legacy/io
> copying src/pynwb/legacy/io/image.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/legacy/io
> copying src/pynwb/legacy/io/misc.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/legacy/io
> copying src/pynwb/legacy/io/file.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/legacy/io
> copying src/pynwb/legacy/io/icephys.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/legacy/io
> copying src/pynwb/legacy/io/ogen.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/legacy/io
> copying src/pynwb/legacy/io/ophys.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/legacy/io
> copying src/pynwb/legacy/io/behavior.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/legacy/io
> copying src/pynwb/legacy/io/base.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/legacy/io
> copying src/pynwb/legacy/io/epoch.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/legacy/io
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/nwb-schema
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/nwb-schema/core
> copying src/pynwb/nwb-schema/core/nwb.retinotopy.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/nwb-schema/core
> copying src/pynwb/nwb-schema/core/nwb.epoch.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/nwb-schema/core
> copying src/pynwb/nwb-schema/core/nwb.image.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/nwb-schema/core
> copying src/pynwb/nwb-schema/core/nwb.base.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/nwb-schema/core
> copying src/pynwb/nwb-schema/core/nwb.icephys.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/nwb-schema/core
> copying src/pynwb/nwb-schema/core/nwb.behavior.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/nwb-schema/core
> copying src/pynwb/nwb-schema/core/nwb.ophys.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/nwb-schema/core
> copying src/pynwb/nwb-schema/core/nwb.ecephys.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/nwb-schema/core
> copying src/pynwb/nwb-schema/core/nwb.file.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/nwb-schema/core
> copying src/pynwb/nwb-schema/core/nwb.misc.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/nwb-schema/core
> copying src/pynwb/nwb-schema/core/nwb.namespace.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/nwb-schema/core
> copying src/pynwb/nwb-schema/core/nwb.ogen.yaml -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/nwb-schema/core
> UPDATING /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/_version.py
> set /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pynwb/build/pynwb/_version.py to '1.2.1'
> dh_auto_test -O--buildsystem=pybuild
> pybuild --test -i python{version} -p "3.7 3.8"
> I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build; python3.7 -m unittest discover -v
> pynwb (unittest.loader._FailedTest) ... ERROR
> tests.back_compat.test_read (unittest.loader._FailedTest) ... ERROR
> tests.integration.hdf5.test_base (unittest.loader._FailedTest) ... ERROR
> tests.integration.hdf5.test_device (unittest.loader._FailedTest) ... ERROR
> tests.integration.hdf5.test_ecephys (unittest.loader._FailedTest) ... ERROR
> tests.integration.hdf5.test_icephys (unittest.loader._FailedTest) ... ERROR
> tests.integration.hdf5.test_image (unittest.loader._FailedTest) ... ERROR
> tests.integration.hdf5.test_misc (unittest.loader._FailedTest) ... ERROR
> tests.integration.hdf5.test_modular_storage (unittest.loader._FailedTest) ... ERROR
> tests.integration.hdf5.test_nwbfile (unittest.loader._FailedTest) ... ERROR
> tests.integration.hdf5.test_ogen (unittest.loader._FailedTest) ... ERROR
> tests.integration.hdf5.test_ophys (unittest.loader._FailedTest) ... ERROR
> tests.integration.hdf5.test_scratch (unittest.loader._FailedTest) ... ERROR
> tests.integration.test_io (unittest.loader._FailedTest) ... ERROR
> tests.unit.test_MultiContainerInterface (unittest.loader._FailedTest) ... ERROR
> tests.unit.test_base (unittest.loader._FailedTest) ... ERROR
> tests.unit.test_behavior (unittest.loader._FailedTest) ... ERROR
> tests.unit.test_core (unittest.loader._FailedTest) ... ERROR
> tests.unit.test_core_NWBContainer (unittest.loader._FailedTest) ... ERROR
> tests.unit.test_device (unittest.loader._FailedTest) ... ERROR
> tests.unit.test_ecephys (unittest.loader._FailedTest) ... ERROR
> tests.unit.test_epoch (unittest.loader._FailedTest) ... ERROR
> tests.unit.test_extension (unittest.loader._FailedTest) ... ERROR
> tests.unit.test_file (unittest.loader._FailedTest) ... ERROR
> tests.unit.test_icephys (unittest.loader._FailedTest) ... ERROR
> tests.unit.test_image (unittest.loader._FailedTest) ... ERROR
> tests.unit.test_misc (unittest.loader._FailedTest) ... ERROR
> tests.unit.test_ogen (unittest.loader._FailedTest) ... ERROR
> tests.unit.test_ophys (unittest.loader._FailedTest) ... ERROR
> tests.unit.test_retinotopy (unittest.loader._FailedTest) ... ERROR
> tests.unit.test_spec (unittest.loader._FailedTest) ... ERROR
>
> ======================================================================
> ERROR: pynwb (unittest.loader._FailedTest)
> ----------------------------------------------------------------------
> ImportError: Failed to import test module: pynwb
> Traceback (most recent call last):
> File "/usr/lib/python3.7/unittest/loader.py", line 470, in _find_test_path
> package = self._get_module_from_name(name)
> File "/usr/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
> __import__(name)
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/__init__.py", line 15, in <module>
> import hdmf.common
> File "/usr/lib/python3/dist-packages/hdmf/common/__init__.py", line 102, in <module>
> from . import io as __io # noqa: F401,E402
> File "/usr/lib/python3/dist-packages/hdmf/common/io/__init__.py", line 1, in <module>
> from . import table # noqa: F401
> File "/usr/lib/python3/dist-packages/hdmf/common/io/table.py", line 5, in <module>
> from ..table import DynamicTable, VectorIndex
> File "/usr/lib/python3/dist-packages/hdmf/common/table.py", line 3, in <module>
> import pandas as pd
> File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 182, in <module>
> import pandas.testing
> File "/usr/lib/python3/dist-packages/pandas/testing.py", line 7, in <module>
> from pandas.util.testing import (
> File "/usr/lib/python3/dist-packages/pandas/util/testing.py", line 18, in <module>
> from matplotlib.cbook import MatplotlibDeprecationWarning
> ModuleNotFoundError: No module named 'matplotlib'
>
>
> ======================================================================
> ERROR: tests.back_compat.test_read (unittest.loader._FailedTest)
> ----------------------------------------------------------------------
> ImportError: Failed to import test module: tests.back_compat.test_read
> Traceback (most recent call last):
> File "/usr/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
> module = self._get_module_from_name(name)
> File "/usr/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
> __import__(name)
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/tests/back_compat/test_read.py", line 4, in <module>
> from pynwb import NWBHDF5IO, validate
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/__init__.py", line 15, in <module>
> import hdmf.common
> File "/usr/lib/python3/dist-packages/hdmf/common/__init__.py", line 102, in <module>
> from . import io as __io # noqa: F401,E402
> File "/usr/lib/python3/dist-packages/hdmf/common/io/__init__.py", line 1, in <module>
> from . import table # noqa: F401
> File "/usr/lib/python3/dist-packages/hdmf/common/io/table.py", line 5, in <module>
> from ..table import DynamicTable, VectorIndex
> File "/usr/lib/python3/dist-packages/hdmf/common/table.py", line 3, in <module>
> import pandas as pd
> File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 182, in <module>
> import pandas.testing
> File "/usr/lib/python3/dist-packages/pandas/testing.py", line 7, in <module>
> from pandas.util.testing import (
> File "/usr/lib/python3/dist-packages/pandas/util/testing.py", line 18, in <module>
> from matplotlib.cbook import MatplotlibDeprecationWarning
> ModuleNotFoundError: No module named 'matplotlib'
>
>
> ======================================================================
> ERROR: tests.integration.hdf5.test_base (unittest.loader._FailedTest)
> ----------------------------------------------------------------------
> ImportError: Failed to import test module: tests.integration.hdf5.test_base
> Traceback (most recent call last):
> File "/usr/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
> module = self._get_module_from_name(name)
> File "/usr/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
> __import__(name)
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/tests/integration/hdf5/test_base.py", line 5, in <module>
> from pynwb import TimeSeries, NWBFile, NWBHDF5IO
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/__init__.py", line 15, in <module>
> import hdmf.common
> File "/usr/lib/python3/dist-packages/hdmf/common/__init__.py", line 102, in <module>
> from . import io as __io # noqa: F401,E402
> File "/usr/lib/python3/dist-packages/hdmf/common/io/__init__.py", line 1, in <module>
> from . import table # noqa: F401
> File "/usr/lib/python3/dist-packages/hdmf/common/io/table.py", line 5, in <module>
> from ..table import DynamicTable, VectorIndex
> File "/usr/lib/python3/dist-packages/hdmf/common/table.py", line 3, in <module>
> import pandas as pd
> File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 182, in <module>
> import pandas.testing
> File "/usr/lib/python3/dist-packages/pandas/testing.py", line 7, in <module>
> from pandas.util.testing import (
> File "/usr/lib/python3/dist-packages/pandas/util/testing.py", line 18, in <module>
> from matplotlib.cbook import MatplotlibDeprecationWarning
> ModuleNotFoundError: No module named 'matplotlib'
>
>
> ======================================================================
> ERROR: tests.integration.hdf5.test_device (unittest.loader._FailedTest)
> ----------------------------------------------------------------------
> ImportError: Failed to import test module: tests.integration.hdf5.test_device
> Traceback (most recent call last):
> File "/usr/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
> module = self._get_module_from_name(name)
> File "/usr/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
> __import__(name)
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/tests/integration/hdf5/test_device.py", line 1, in <module>
> from pynwb.device import Device
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/__init__.py", line 15, in <module>
> import hdmf.common
> File "/usr/lib/python3/dist-packages/hdmf/common/__init__.py", line 102, in <module>
> from . import io as __io # noqa: F401,E402
> File "/usr/lib/python3/dist-packages/hdmf/common/io/__init__.py", line 1, in <module>
> from . import table # noqa: F401
> File "/usr/lib/python3/dist-packages/hdmf/common/io/table.py", line 5, in <module>
> from ..table import DynamicTable, VectorIndex
> File "/usr/lib/python3/dist-packages/hdmf/common/table.py", line 3, in <module>
> import pandas as pd
> File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 182, in <module>
> import pandas.testing
> File "/usr/lib/python3/dist-packages/pandas/testing.py", line 7, in <module>
> from pandas.util.testing import (
> File "/usr/lib/python3/dist-packages/pandas/util/testing.py", line 18, in <module>
> from matplotlib.cbook import MatplotlibDeprecationWarning
> ModuleNotFoundError: No module named 'matplotlib'
>
>
> ======================================================================
> ERROR: tests.integration.hdf5.test_ecephys (unittest.loader._FailedTest)
> ----------------------------------------------------------------------
> ImportError: Failed to import test module: tests.integration.hdf5.test_ecephys
> Traceback (most recent call last):
> File "/usr/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
> module = self._get_module_from_name(name)
> File "/usr/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
> __import__(name)
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/tests/integration/hdf5/test_ecephys.py", line 1, in <module>
> from hdmf.common import DynamicTableRegion
> File "/usr/lib/python3/dist-packages/hdmf/common/__init__.py", line 102, in <module>
> from . import io as __io # noqa: F401,E402
> File "/usr/lib/python3/dist-packages/hdmf/common/io/__init__.py", line 1, in <module>
> from . import table # noqa: F401
> File "/usr/lib/python3/dist-packages/hdmf/common/io/table.py", line 5, in <module>
> from ..table import DynamicTable, VectorIndex
> File "/usr/lib/python3/dist-packages/hdmf/common/table.py", line 3, in <module>
> import pandas as pd
> File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 182, in <module>
> import pandas.testing
> File "/usr/lib/python3/dist-packages/pandas/testing.py", line 7, in <module>
> from pandas.util.testing import (
> File "/usr/lib/python3/dist-packages/pandas/util/testing.py", line 18, in <module>
> from matplotlib.cbook import MatplotlibDeprecationWarning
> ModuleNotFoundError: No module named 'matplotlib'
>
>
> ======================================================================
> ERROR: tests.integration.hdf5.test_icephys (unittest.loader._FailedTest)
> ----------------------------------------------------------------------
> ImportError: Failed to import test module: tests.integration.hdf5.test_icephys
> Traceback (most recent call last):
> File "/usr/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
> module = self._get_module_from_name(name)
> File "/usr/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
> __import__(name)
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/tests/integration/hdf5/test_icephys.py", line 1, in <module>
> from pynwb import NWBFile
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/__init__.py", line 15, in <module>
> import hdmf.common
> File "/usr/lib/python3/dist-packages/hdmf/common/__init__.py", line 102, in <module>
> from . import io as __io # noqa: F401,E402
> File "/usr/lib/python3/dist-packages/hdmf/common/io/__init__.py", line 1, in <module>
> from . import table # noqa: F401
> File "/usr/lib/python3/dist-packages/hdmf/common/io/table.py", line 5, in <module>
> from ..table import DynamicTable, VectorIndex
> File "/usr/lib/python3/dist-packages/hdmf/common/table.py", line 3, in <module>
> import pandas as pd
> File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 182, in <module>
> import pandas.testing
> File "/usr/lib/python3/dist-packages/pandas/testing.py", line 7, in <module>
> from pandas.util.testing import (
> File "/usr/lib/python3/dist-packages/pandas/util/testing.py", line 18, in <module>
> from matplotlib.cbook import MatplotlibDeprecationWarning
> ModuleNotFoundError: No module named 'matplotlib'
>
>
> ======================================================================
> ERROR: tests.integration.hdf5.test_image (unittest.loader._FailedTest)
> ----------------------------------------------------------------------
> ImportError: Failed to import test module: tests.integration.hdf5.test_image
> Traceback (most recent call last):
> File "/usr/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
> module = self._get_module_from_name(name)
> File "/usr/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
> __import__(name)
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/tests/integration/hdf5/test_image.py", line 3, in <module>
> from pynwb.image import OpticalSeries
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/__init__.py", line 15, in <module>
> import hdmf.common
> File "/usr/lib/python3/dist-packages/hdmf/common/__init__.py", line 102, in <module>
> from . import io as __io # noqa: F401,E402
> File "/usr/lib/python3/dist-packages/hdmf/common/io/__init__.py", line 1, in <module>
> from . import table # noqa: F401
> File "/usr/lib/python3/dist-packages/hdmf/common/io/table.py", line 5, in <module>
> from ..table import DynamicTable, VectorIndex
> File "/usr/lib/python3/dist-packages/hdmf/common/table.py", line 3, in <module>
> import pandas as pd
> File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 182, in <module>
> import pandas.testing
> File "/usr/lib/python3/dist-packages/pandas/testing.py", line 7, in <module>
> from pandas.util.testing import (
> File "/usr/lib/python3/dist-packages/pandas/util/testing.py", line 18, in <module>
> from matplotlib.cbook import MatplotlibDeprecationWarning
> ModuleNotFoundError: No module named 'matplotlib'
>
>
> ======================================================================
> ERROR: tests.integration.hdf5.test_misc (unittest.loader._FailedTest)
> ----------------------------------------------------------------------
> ImportError: Failed to import test module: tests.integration.hdf5.test_misc
> Traceback (most recent call last):
> File "/usr/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
> module = self._get_module_from_name(name)
> File "/usr/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
> __import__(name)
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/tests/integration/hdf5/test_misc.py", line 3, in <module>
> from hdmf.common import DynamicTable, VectorData
> File "/usr/lib/python3/dist-packages/hdmf/common/__init__.py", line 102, in <module>
> from . import io as __io # noqa: F401,E402
> File "/usr/lib/python3/dist-packages/hdmf/common/io/__init__.py", line 1, in <module>
> from . import table # noqa: F401
> File "/usr/lib/python3/dist-packages/hdmf/common/io/table.py", line 5, in <module>
> from ..table import DynamicTable, VectorIndex
> File "/usr/lib/python3/dist-packages/hdmf/common/table.py", line 3, in <module>
> import pandas as pd
> File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 182, in <module>
> import pandas.testing
> File "/usr/lib/python3/dist-packages/pandas/testing.py", line 7, in <module>
> from pandas.util.testing import (
> File "/usr/lib/python3/dist-packages/pandas/util/testing.py", line 18, in <module>
> from matplotlib.cbook import MatplotlibDeprecationWarning
> ModuleNotFoundError: No module named 'matplotlib'
>
>
> ======================================================================
> ERROR: tests.integration.hdf5.test_modular_storage (unittest.loader._FailedTest)
> ----------------------------------------------------------------------
> ImportError: Failed to import test module: tests.integration.hdf5.test_modular_storage
> Traceback (most recent call last):
> File "/usr/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
> module = self._get_module_from_name(name)
> File "/usr/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
> __import__(name)
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/tests/integration/hdf5/test_modular_storage.py", line 10, in <module>
> from pynwb import get_manager, NWBFile, NWBHDF5IO, TimeSeries, validate as pynwb_validate
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/__init__.py", line 15, in <module>
> import hdmf.common
> File "/usr/lib/python3/dist-packages/hdmf/common/__init__.py", line 102, in <module>
> from . import io as __io # noqa: F401,E402
> File "/usr/lib/python3/dist-packages/hdmf/common/io/__init__.py", line 1, in <module>
> from . import table # noqa: F401
> File "/usr/lib/python3/dist-packages/hdmf/common/io/table.py", line 5, in <module>
> from ..table import DynamicTable, VectorIndex
> File "/usr/lib/python3/dist-packages/hdmf/common/table.py", line 3, in <module>
> import pandas as pd
> File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 182, in <module>
> import pandas.testing
> File "/usr/lib/python3/dist-packages/pandas/testing.py", line 7, in <module>
> from pandas.util.testing import (
> File "/usr/lib/python3/dist-packages/pandas/util/testing.py", line 18, in <module>
> from matplotlib.cbook import MatplotlibDeprecationWarning
> ModuleNotFoundError: No module named 'matplotlib'
>
>
> ======================================================================
> ERROR: tests.integration.hdf5.test_nwbfile (unittest.loader._FailedTest)
> ----------------------------------------------------------------------
> ImportError: Failed to import test module: tests.integration.hdf5.test_nwbfile
> Traceback (most recent call last):
> File "/usr/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
> module = self._get_module_from_name(name)
> File "/usr/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
> __import__(name)
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/tests/integration/hdf5/test_nwbfile.py", line 3, in <module>
> import pandas as pd
> File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 182, in <module>
> import pandas.testing
> File "/usr/lib/python3/dist-packages/pandas/testing.py", line 7, in <module>
> from pandas.util.testing import (
> File "/usr/lib/python3/dist-packages/pandas/util/testing.py", line 18, in <module>
> from matplotlib.cbook import MatplotlibDeprecationWarning
> ModuleNotFoundError: No module named 'matplotlib'
>
>
> ======================================================================
> ERROR: tests.integration.hdf5.test_ogen (unittest.loader._FailedTest)
> ----------------------------------------------------------------------
> ImportError: Failed to import test module: tests.integration.hdf5.test_ogen
> Traceback (most recent call last):
> File "/usr/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
> module = self._get_module_from_name(name)
> File "/usr/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
> __import__(name)
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/tests/integration/hdf5/test_ogen.py", line 1, in <module>
> from pynwb.ogen import OptogeneticSeries, OptogeneticStimulusSite
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/__init__.py", line 15, in <module>
> import hdmf.common
> File "/usr/lib/python3/dist-packages/hdmf/common/__init__.py", line 102, in <module>
> from . import io as __io # noqa: F401,E402
> File "/usr/lib/python3/dist-packages/hdmf/common/io/__init__.py", line 1, in <module>
> from . import table # noqa: F401
> File "/usr/lib/python3/dist-packages/hdmf/common/io/table.py", line 5, in <module>
> from ..table import DynamicTable, VectorIndex
> File "/usr/lib/python3/dist-packages/hdmf/common/table.py", line 3, in <module>
> import pandas as pd
> File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 182, in <module>
> import pandas.testing
> File "/usr/lib/python3/dist-packages/pandas/testing.py", line 7, in <module>
> from pandas.util.testing import (
> File "/usr/lib/python3/dist-packages/pandas/util/testing.py", line 18, in <module>
> from matplotlib.cbook import MatplotlibDeprecationWarning
> ModuleNotFoundError: No module named 'matplotlib'
>
>
> ======================================================================
> ERROR: tests.integration.hdf5.test_ophys (unittest.loader._FailedTest)
> ----------------------------------------------------------------------
> ImportError: Failed to import test module: tests.integration.hdf5.test_ophys
> Traceback (most recent call last):
> File "/usr/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
> module = self._get_module_from_name(name)
> File "/usr/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
> __import__(name)
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/tests/integration/hdf5/test_ophys.py", line 4, in <module>
> from pynwb.ophys import (
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/__init__.py", line 15, in <module>
> import hdmf.common
> File "/usr/lib/python3/dist-packages/hdmf/common/__init__.py", line 102, in <module>
> from . import io as __io # noqa: F401,E402
> File "/usr/lib/python3/dist-packages/hdmf/common/io/__init__.py", line 1, in <module>
> from . import table # noqa: F401
> File "/usr/lib/python3/dist-packages/hdmf/common/io/table.py", line 5, in <module>
> from ..table import DynamicTable, VectorIndex
> File "/usr/lib/python3/dist-packages/hdmf/common/table.py", line 3, in <module>
> import pandas as pd
> File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 182, in <module>
> import pandas.testing
> File "/usr/lib/python3/dist-packages/pandas/testing.py", line 7, in <module>
> from pandas.util.testing import (
> File "/usr/lib/python3/dist-packages/pandas/util/testing.py", line 18, in <module>
> from matplotlib.cbook import MatplotlibDeprecationWarning
> ModuleNotFoundError: No module named 'matplotlib'
>
>
> ======================================================================
> ERROR: tests.integration.hdf5.test_scratch (unittest.loader._FailedTest)
> ----------------------------------------------------------------------
> ImportError: Failed to import test module: tests.integration.hdf5.test_scratch
> Traceback (most recent call last):
> File "/usr/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
> module = self._get_module_from_name(name)
> File "/usr/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
> __import__(name)
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/tests/integration/hdf5/test_scratch.py", line 1, in <module>
> import pandas as pd
> File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 182, in <module>
> import pandas.testing
> File "/usr/lib/python3/dist-packages/pandas/testing.py", line 7, in <module>
> from pandas.util.testing import (
> File "/usr/lib/python3/dist-packages/pandas/util/testing.py", line 18, in <module>
> from matplotlib.cbook import MatplotlibDeprecationWarning
> ModuleNotFoundError: No module named 'matplotlib'
>
>
> ======================================================================
> ERROR: tests.integration.test_io (unittest.loader._FailedTest)
> ----------------------------------------------------------------------
> ImportError: Failed to import test module: tests.integration.test_io
> Traceback (most recent call last):
> File "/usr/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
> module = self._get_module_from_name(name)
> File "/usr/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
> __import__(name)
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/tests/integration/test_io.py", line 6, in <module>
> from pynwb import NWBFile, TimeSeries, get_manager, NWBHDF5IO, validate
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/__init__.py", line 15, in <module>
> import hdmf.common
> File "/usr/lib/python3/dist-packages/hdmf/common/__init__.py", line 102, in <module>
> from . import io as __io # noqa: F401,E402
> File "/usr/lib/python3/dist-packages/hdmf/common/io/__init__.py", line 1, in <module>
> from . import table # noqa: F401
> File "/usr/lib/python3/dist-packages/hdmf/common/io/table.py", line 5, in <module>
> from ..table import DynamicTable, VectorIndex
> File "/usr/lib/python3/dist-packages/hdmf/common/table.py", line 3, in <module>
> import pandas as pd
> File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 182, in <module>
> import pandas.testing
> File "/usr/lib/python3/dist-packages/pandas/testing.py", line 7, in <module>
> from pandas.util.testing import (
> File "/usr/lib/python3/dist-packages/pandas/util/testing.py", line 18, in <module>
> from matplotlib.cbook import MatplotlibDeprecationWarning
> ModuleNotFoundError: No module named 'matplotlib'
>
>
> ======================================================================
> ERROR: tests.unit.test_MultiContainerInterface (unittest.loader._FailedTest)
> ----------------------------------------------------------------------
> ImportError: Failed to import test module: tests.unit.test_MultiContainerInterface
> Traceback (most recent call last):
> File "/usr/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
> module = self._get_module_from_name(name)
> File "/usr/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
> __import__(name)
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/tests/unit/test_MultiContainerInterface.py", line 2, in <module>
> from pynwb.file import MultiContainerInterface, NWBDataInterface
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/__init__.py", line 15, in <module>
> import hdmf.common
> File "/usr/lib/python3/dist-packages/hdmf/common/__init__.py", line 102, in <module>
> from . import io as __io # noqa: F401,E402
> File "/usr/lib/python3/dist-packages/hdmf/common/io/__init__.py", line 1, in <module>
> from . import table # noqa: F401
> File "/usr/lib/python3/dist-packages/hdmf/common/io/table.py", line 5, in <module>
> from ..table import DynamicTable, VectorIndex
> File "/usr/lib/python3/dist-packages/hdmf/common/table.py", line 3, in <module>
> import pandas as pd
> File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 182, in <module>
> import pandas.testing
> File "/usr/lib/python3/dist-packages/pandas/testing.py", line 7, in <module>
> from pandas.util.testing import (
> File "/usr/lib/python3/dist-packages/pandas/util/testing.py", line 18, in <module>
> from matplotlib.cbook import MatplotlibDeprecationWarning
> ModuleNotFoundError: No module named 'matplotlib'
>
>
> ======================================================================
> ERROR: tests.unit.test_base (unittest.loader._FailedTest)
> ----------------------------------------------------------------------
> ImportError: Failed to import test module: tests.unit.test_base
> Traceback (most recent call last):
> File "/usr/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
> module = self._get_module_from_name(name)
> File "/usr/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
> __import__(name)
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/tests/unit/test_base.py", line 3, in <module>
> from pynwb.base import ProcessingModule, TimeSeries, Images, Image
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/__init__.py", line 15, in <module>
> import hdmf.common
> File "/usr/lib/python3/dist-packages/hdmf/common/__init__.py", line 102, in <module>
> from . import io as __io # noqa: F401,E402
> File "/usr/lib/python3/dist-packages/hdmf/common/io/__init__.py", line 1, in <module>
> from . import table # noqa: F401
> File "/usr/lib/python3/dist-packages/hdmf/common/io/table.py", line 5, in <module>
> from ..table import DynamicTable, VectorIndex
> File "/usr/lib/python3/dist-packages/hdmf/common/table.py", line 3, in <module>
> import pandas as pd
> File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 182, in <module>
> import pandas.testing
> File "/usr/lib/python3/dist-packages/pandas/testing.py", line 7, in <module>
> from pandas.util.testing import (
> File "/usr/lib/python3/dist-packages/pandas/util/testing.py", line 18, in <module>
> from matplotlib.cbook import MatplotlibDeprecationWarning
> ModuleNotFoundError: No module named 'matplotlib'
>
>
> ======================================================================
> ERROR: tests.unit.test_behavior (unittest.loader._FailedTest)
> ----------------------------------------------------------------------
> ImportError: Failed to import test module: tests.unit.test_behavior
> Traceback (most recent call last):
> File "/usr/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
> module = self._get_module_from_name(name)
> File "/usr/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
> __import__(name)
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/tests/unit/test_behavior.py", line 3, in <module>
> from pynwb import TimeSeries
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/__init__.py", line 15, in <module>
> import hdmf.common
> File "/usr/lib/python3/dist-packages/hdmf/common/__init__.py", line 102, in <module>
> from . import io as __io # noqa: F401,E402
> File "/usr/lib/python3/dist-packages/hdmf/common/io/__init__.py", line 1, in <module>
> from . import table # noqa: F401
> File "/usr/lib/python3/dist-packages/hdmf/common/io/table.py", line 5, in <module>
> from ..table import DynamicTable, VectorIndex
> File "/usr/lib/python3/dist-packages/hdmf/common/table.py", line 3, in <module>
> import pandas as pd
> File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 182, in <module>
> import pandas.testing
> File "/usr/lib/python3/dist-packages/pandas/testing.py", line 7, in <module>
> from pandas.util.testing import (
> File "/usr/lib/python3/dist-packages/pandas/util/testing.py", line 18, in <module>
> from matplotlib.cbook import MatplotlibDeprecationWarning
> ModuleNotFoundError: No module named 'matplotlib'
>
>
> ======================================================================
> ERROR: tests.unit.test_core (unittest.loader._FailedTest)
> ----------------------------------------------------------------------
> ImportError: Failed to import test module: tests.unit.test_core
> Traceback (most recent call last):
> File "/usr/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
> module = self._get_module_from_name(name)
> File "/usr/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
> __import__(name)
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/tests/unit/test_core.py", line 6, in <module>
> from pynwb import NWBFile, TimeSeries, available_namespaces
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/__init__.py", line 15, in <module>
> import hdmf.common
> File "/usr/lib/python3/dist-packages/hdmf/common/__init__.py", line 102, in <module>
> from . import io as __io # noqa: F401,E402
> File "/usr/lib/python3/dist-packages/hdmf/common/io/__init__.py", line 1, in <module>
> from . import table # noqa: F401
> File "/usr/lib/python3/dist-packages/hdmf/common/io/table.py", line 5, in <module>
> from ..table import DynamicTable, VectorIndex
> File "/usr/lib/python3/dist-packages/hdmf/common/table.py", line 3, in <module>
> import pandas as pd
> File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 182, in <module>
> import pandas.testing
> File "/usr/lib/python3/dist-packages/pandas/testing.py", line 7, in <module>
> from pandas.util.testing import (
> File "/usr/lib/python3/dist-packages/pandas/util/testing.py", line 18, in <module>
> from matplotlib.cbook import MatplotlibDeprecationWarning
> ModuleNotFoundError: No module named 'matplotlib'
>
>
> ======================================================================
> ERROR: tests.unit.test_core_NWBContainer (unittest.loader._FailedTest)
> ----------------------------------------------------------------------
> ImportError: Failed to import test module: tests.unit.test_core_NWBContainer
> Traceback (most recent call last):
> File "/usr/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
> module = self._get_module_from_name(name)
> File "/usr/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
> __import__(name)
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/tests/unit/test_core_NWBContainer.py", line 3, in <module>
> from pynwb.core import NWBContainer
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/__init__.py", line 15, in <module>
> import hdmf.common
> File "/usr/lib/python3/dist-packages/hdmf/common/__init__.py", line 102, in <module>
> from . import io as __io # noqa: F401,E402
> File "/usr/lib/python3/dist-packages/hdmf/common/io/__init__.py", line 1, in <module>
> from . import table # noqa: F401
> File "/usr/lib/python3/dist-packages/hdmf/common/io/table.py", line 5, in <module>
> from ..table import DynamicTable, VectorIndex
> File "/usr/lib/python3/dist-packages/hdmf/common/table.py", line 3, in <module>
> import pandas as pd
> File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 182, in <module>
> import pandas.testing
> File "/usr/lib/python3/dist-packages/pandas/testing.py", line 7, in <module>
> from pandas.util.testing import (
> File "/usr/lib/python3/dist-packages/pandas/util/testing.py", line 18, in <module>
> from matplotlib.cbook import MatplotlibDeprecationWarning
> ModuleNotFoundError: No module named 'matplotlib'
>
>
> ======================================================================
> ERROR: tests.unit.test_device (unittest.loader._FailedTest)
> ----------------------------------------------------------------------
> ImportError: Failed to import test module: tests.unit.test_device
> Traceback (most recent call last):
> File "/usr/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
> module = self._get_module_from_name(name)
> File "/usr/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
> __import__(name)
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/tests/unit/test_device.py", line 1, in <module>
> from pynwb.device import Device
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/__init__.py", line 15, in <module>
> import hdmf.common
> File "/usr/lib/python3/dist-packages/hdmf/common/__init__.py", line 102, in <module>
> from . import io as __io # noqa: F401,E402
> File "/usr/lib/python3/dist-packages/hdmf/common/io/__init__.py", line 1, in <module>
> from . import table # noqa: F401
> File "/usr/lib/python3/dist-packages/hdmf/common/io/table.py", line 5, in <module>
> from ..table import DynamicTable, VectorIndex
> File "/usr/lib/python3/dist-packages/hdmf/common/table.py", line 3, in <module>
> import pandas as pd
> File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 182, in <module>
> import pandas.testing
> File "/usr/lib/python3/dist-packages/pandas/testing.py", line 7, in <module>
> from pandas.util.testing import (
> File "/usr/lib/python3/dist-packages/pandas/util/testing.py", line 18, in <module>
> from matplotlib.cbook import MatplotlibDeprecationWarning
> ModuleNotFoundError: No module named 'matplotlib'
>
>
> ======================================================================
> ERROR: tests.unit.test_ecephys (unittest.loader._FailedTest)
> ----------------------------------------------------------------------
> ImportError: Failed to import test module: tests.unit.test_ecephys
> Traceback (most recent call last):
> File "/usr/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
> module = self._get_module_from_name(name)
> File "/usr/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
> __import__(name)
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/tests/unit/test_ecephys.py", line 3, in <module>
> from pynwb.ecephys import ElectricalSeries, SpikeEventSeries, EventDetection, Clustering, EventWaveform,\
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/__init__.py", line 15, in <module>
> import hdmf.common
> File "/usr/lib/python3/dist-packages/hdmf/common/__init__.py", line 102, in <module>
> from . import io as __io # noqa: F401,E402
> File "/usr/lib/python3/dist-packages/hdmf/common/io/__init__.py", line 1, in <module>
> from . import table # noqa: F401
> File "/usr/lib/python3/dist-packages/hdmf/common/io/table.py", line 5, in <module>
> from ..table import DynamicTable, VectorIndex
> File "/usr/lib/python3/dist-packages/hdmf/common/table.py", line 3, in <module>
> import pandas as pd
> File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 182, in <module>
> import pandas.testing
> File "/usr/lib/python3/dist-packages/pandas/testing.py", line 7, in <module>
> from pandas.util.testing import (
> File "/usr/lib/python3/dist-packages/pandas/util/testing.py", line 18, in <module>
> from matplotlib.cbook import MatplotlibDeprecationWarning
> ModuleNotFoundError: No module named 'matplotlib'
>
>
> ======================================================================
> ERROR: tests.unit.test_epoch (unittest.loader._FailedTest)
> ----------------------------------------------------------------------
> ImportError: Failed to import test module: tests.unit.test_epoch
> Traceback (most recent call last):
> File "/usr/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
> module = self._get_module_from_name(name)
> File "/usr/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
> __import__(name)
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/tests/unit/test_epoch.py", line 2, in <module>
> import pandas as pd
> File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 182, in <module>
> import pandas.testing
> File "/usr/lib/python3/dist-packages/pandas/testing.py", line 7, in <module>
> from pandas.util.testing import (
> File "/usr/lib/python3/dist-packages/pandas/util/testing.py", line 18, in <module>
> from matplotlib.cbook import MatplotlibDeprecationWarning
> ModuleNotFoundError: No module named 'matplotlib'
>
>
> ======================================================================
> ERROR: tests.unit.test_extension (unittest.loader._FailedTest)
> ----------------------------------------------------------------------
> ImportError: Failed to import test module: tests.unit.test_extension
> Traceback (most recent call last):
> File "/usr/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
> module = self._get_module_from_name(name)
> File "/usr/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
> __import__(name)
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/tests/unit/test_extension.py", line 10, in <module>
> from pynwb import get_type_map, TimeSeries, NWBFile, register_class, load_namespaces, get_class
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/__init__.py", line 15, in <module>
> import hdmf.common
> File "/usr/lib/python3/dist-packages/hdmf/common/__init__.py", line 102, in <module>
> from . import io as __io # noqa: F401,E402
> File "/usr/lib/python3/dist-packages/hdmf/common/io/__init__.py", line 1, in <module>
> from . import table # noqa: F401
> File "/usr/lib/python3/dist-packages/hdmf/common/io/table.py", line 5, in <module>
> from ..table import DynamicTable, VectorIndex
> File "/usr/lib/python3/dist-packages/hdmf/common/table.py", line 3, in <module>
> import pandas as pd
> File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 182, in <module>
> import pandas.testing
> File "/usr/lib/python3/dist-packages/pandas/testing.py", line 7, in <module>
> from pandas.util.testing import (
> File "/usr/lib/python3/dist-packages/pandas/util/testing.py", line 18, in <module>
> from matplotlib.cbook import MatplotlibDeprecationWarning
> ModuleNotFoundError: No module named 'matplotlib'
>
>
> ======================================================================
> ERROR: tests.unit.test_file (unittest.loader._FailedTest)
> ----------------------------------------------------------------------
> ImportError: Failed to import test module: tests.unit.test_file
> Traceback (most recent call last):
> File "/usr/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
> module = self._get_module_from_name(name)
> File "/usr/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
> __import__(name)
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/tests/unit/test_file.py", line 3, in <module>
> import pandas as pd
> File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 182, in <module>
> import pandas.testing
> File "/usr/lib/python3/dist-packages/pandas/testing.py", line 7, in <module>
> from pandas.util.testing import (
> File "/usr/lib/python3/dist-packages/pandas/util/testing.py", line 18, in <module>
> from matplotlib.cbook import MatplotlibDeprecationWarning
> ModuleNotFoundError: No module named 'matplotlib'
>
>
> ======================================================================
> ERROR: tests.unit.test_icephys (unittest.loader._FailedTest)
> ----------------------------------------------------------------------
> ImportError: Failed to import test module: tests.unit.test_icephys
> Traceback (most recent call last):
> File "/usr/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
> module = self._get_module_from_name(name)
> File "/usr/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
> __import__(name)
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/tests/unit/test_icephys.py", line 3, in <module>
> from pynwb.icephys import PatchClampSeries, CurrentClampSeries, IZeroClampSeries, CurrentClampStimulusSeries, \
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/__init__.py", line 15, in <module>
> import hdmf.common
> File "/usr/lib/python3/dist-packages/hdmf/common/__init__.py", line 102, in <module>
> from . import io as __io # noqa: F401,E402
> File "/usr/lib/python3/dist-packages/hdmf/common/io/__init__.py", line 1, in <module>
> from . import table # noqa: F401
> File "/usr/lib/python3/dist-packages/hdmf/common/io/table.py", line 5, in <module>
> from ..table import DynamicTable, VectorIndex
> File "/usr/lib/python3/dist-packages/hdmf/common/table.py", line 3, in <module>
> import pandas as pd
> File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 182, in <module>
> import pandas.testing
> File "/usr/lib/python3/dist-packages/pandas/testing.py", line 7, in <module>
> from pandas.util.testing import (
> File "/usr/lib/python3/dist-packages/pandas/util/testing.py", line 18, in <module>
> from matplotlib.cbook import MatplotlibDeprecationWarning
> ModuleNotFoundError: No module named 'matplotlib'
>
>
> ======================================================================
> ERROR: tests.unit.test_image (unittest.loader._FailedTest)
> ----------------------------------------------------------------------
> ImportError: Failed to import test module: tests.unit.test_image
> Traceback (most recent call last):
> File "/usr/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
> module = self._get_module_from_name(name)
> File "/usr/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
> __import__(name)
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/tests/unit/test_image.py", line 3, in <module>
> from pynwb import TimeSeries
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/__init__.py", line 15, in <module>
> import hdmf.common
> File "/usr/lib/python3/dist-packages/hdmf/common/__init__.py", line 102, in <module>
> from . import io as __io # noqa: F401,E402
> File "/usr/lib/python3/dist-packages/hdmf/common/io/__init__.py", line 1, in <module>
> from . import table # noqa: F401
> File "/usr/lib/python3/dist-packages/hdmf/common/io/table.py", line 5, in <module>
> from ..table import DynamicTable, VectorIndex
> File "/usr/lib/python3/dist-packages/hdmf/common/table.py", line 3, in <module>
> import pandas as pd
> File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 182, in <module>
> import pandas.testing
> File "/usr/lib/python3/dist-packages/pandas/testing.py", line 7, in <module>
> from pandas.util.testing import (
> File "/usr/lib/python3/dist-packages/pandas/util/testing.py", line 18, in <module>
> from matplotlib.cbook import MatplotlibDeprecationWarning
> ModuleNotFoundError: No module named 'matplotlib'
>
>
> ======================================================================
> ERROR: tests.unit.test_misc (unittest.loader._FailedTest)
> ----------------------------------------------------------------------
> ImportError: Failed to import test module: tests.unit.test_misc
> Traceback (most recent call last):
> File "/usr/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
> module = self._get_module_from_name(name)
> File "/usr/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
> __import__(name)
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/tests/unit/test_misc.py", line 3, in <module>
> from hdmf.common import DynamicTable, VectorData
> File "/usr/lib/python3/dist-packages/hdmf/common/__init__.py", line 102, in <module>
> from . import io as __io # noqa: F401,E402
> File "/usr/lib/python3/dist-packages/hdmf/common/io/__init__.py", line 1, in <module>
> from . import table # noqa: F401
> File "/usr/lib/python3/dist-packages/hdmf/common/io/table.py", line 5, in <module>
> from ..table import DynamicTable, VectorIndex
> File "/usr/lib/python3/dist-packages/hdmf/common/table.py", line 3, in <module>
> import pandas as pd
> File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 182, in <module>
> import pandas.testing
> File "/usr/lib/python3/dist-packages/pandas/testing.py", line 7, in <module>
> from pandas.util.testing import (
> File "/usr/lib/python3/dist-packages/pandas/util/testing.py", line 18, in <module>
> from matplotlib.cbook import MatplotlibDeprecationWarning
> ModuleNotFoundError: No module named 'matplotlib'
>
>
> ======================================================================
> ERROR: tests.unit.test_ogen (unittest.loader._FailedTest)
> ----------------------------------------------------------------------
> ImportError: Failed to import test module: tests.unit.test_ogen
> Traceback (most recent call last):
> File "/usr/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
> module = self._get_module_from_name(name)
> File "/usr/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
> __import__(name)
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/tests/unit/test_ogen.py", line 1, in <module>
> from pynwb.ogen import OptogeneticSeries, OptogeneticStimulusSite
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/__init__.py", line 15, in <module>
> import hdmf.common
> File "/usr/lib/python3/dist-packages/hdmf/common/__init__.py", line 102, in <module>
> from . import io as __io # noqa: F401,E402
> File "/usr/lib/python3/dist-packages/hdmf/common/io/__init__.py", line 1, in <module>
> from . import table # noqa: F401
> File "/usr/lib/python3/dist-packages/hdmf/common/io/table.py", line 5, in <module>
> from ..table import DynamicTable, VectorIndex
> File "/usr/lib/python3/dist-packages/hdmf/common/table.py", line 3, in <module>
> import pandas as pd
> File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 182, in <module>
> import pandas.testing
> File "/usr/lib/python3/dist-packages/pandas/testing.py", line 7, in <module>
> from pandas.util.testing import (
> File "/usr/lib/python3/dist-packages/pandas/util/testing.py", line 18, in <module>
> from matplotlib.cbook import MatplotlibDeprecationWarning
> ModuleNotFoundError: No module named 'matplotlib'
>
>
> ======================================================================
> ERROR: tests.unit.test_ophys (unittest.loader._FailedTest)
> ----------------------------------------------------------------------
> ImportError: Failed to import test module: tests.unit.test_ophys
> Traceback (most recent call last):
> File "/usr/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
> module = self._get_module_from_name(name)
> File "/usr/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
> __import__(name)
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/tests/unit/test_ophys.py", line 3, in <module>
> from pynwb.ophys import TwoPhotonSeries, RoiResponseSeries, DfOverF, Fluorescence, PlaneSegmentation, \
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/__init__.py", line 15, in <module>
> import hdmf.common
> File "/usr/lib/python3/dist-packages/hdmf/common/__init__.py", line 102, in <module>
> from . import io as __io # noqa: F401,E402
> File "/usr/lib/python3/dist-packages/hdmf/common/io/__init__.py", line 1, in <module>
> from . import table # noqa: F401
> File "/usr/lib/python3/dist-packages/hdmf/common/io/table.py", line 5, in <module>
> from ..table import DynamicTable, VectorIndex
> File "/usr/lib/python3/dist-packages/hdmf/common/table.py", line 3, in <module>
> import pandas as pd
> File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 182, in <module>
> import pandas.testing
> File "/usr/lib/python3/dist-packages/pandas/testing.py", line 7, in <module>
> from pandas.util.testing import (
> File "/usr/lib/python3/dist-packages/pandas/util/testing.py", line 18, in <module>
> from matplotlib.cbook import MatplotlibDeprecationWarning
> ModuleNotFoundError: No module named 'matplotlib'
>
>
> ======================================================================
> ERROR: tests.unit.test_retinotopy (unittest.loader._FailedTest)
> ----------------------------------------------------------------------
> ImportError: Failed to import test module: tests.unit.test_retinotopy
> Traceback (most recent call last):
> File "/usr/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
> module = self._get_module_from_name(name)
> File "/usr/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
> __import__(name)
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/tests/unit/test_retinotopy.py", line 3, in <module>
> from pynwb.retinotopy import ImagingRetinotopy, AxisMap, AImage
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/__init__.py", line 15, in <module>
> import hdmf.common
> File "/usr/lib/python3/dist-packages/hdmf/common/__init__.py", line 102, in <module>
> from . import io as __io # noqa: F401,E402
> File "/usr/lib/python3/dist-packages/hdmf/common/io/__init__.py", line 1, in <module>
> from . import table # noqa: F401
> File "/usr/lib/python3/dist-packages/hdmf/common/io/table.py", line 5, in <module>
> from ..table import DynamicTable, VectorIndex
> File "/usr/lib/python3/dist-packages/hdmf/common/table.py", line 3, in <module>
> import pandas as pd
> File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 182, in <module>
> import pandas.testing
> File "/usr/lib/python3/dist-packages/pandas/testing.py", line 7, in <module>
> from pandas.util.testing import (
> File "/usr/lib/python3/dist-packages/pandas/util/testing.py", line 18, in <module>
> from matplotlib.cbook import MatplotlibDeprecationWarning
> ModuleNotFoundError: No module named 'matplotlib'
>
>
> ======================================================================
> ERROR: tests.unit.test_spec (unittest.loader._FailedTest)
> ----------------------------------------------------------------------
> ImportError: Failed to import test module: tests.unit.test_spec
> Traceback (most recent call last):
> File "/usr/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
> module = self._get_module_from_name(name)
> File "/usr/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
> __import__(name)
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/tests/unit/test_spec.py", line 9, in <module>
> from pynwb.spec import NWBNamespaceBuilder, NWBRefSpec
> File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build/pynwb/__init__.py", line 15, in <module>
> import hdmf.common
> File "/usr/lib/python3/dist-packages/hdmf/common/__init__.py", line 102, in <module>
> from . import io as __io # noqa: F401,E402
> File "/usr/lib/python3/dist-packages/hdmf/common/io/__init__.py", line 1, in <module>
> from . import table # noqa: F401
> File "/usr/lib/python3/dist-packages/hdmf/common/io/table.py", line 5, in <module>
> from ..table import DynamicTable, VectorIndex
> File "/usr/lib/python3/dist-packages/hdmf/common/table.py", line 3, in <module>
> import pandas as pd
> File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 182, in <module>
> import pandas.testing
> File "/usr/lib/python3/dist-packages/pandas/testing.py", line 7, in <module>
> from pandas.util.testing import (
> File "/usr/lib/python3/dist-packages/pandas/util/testing.py", line 18, in <module>
> from matplotlib.cbook import MatplotlibDeprecationWarning
> ModuleNotFoundError: No module named 'matplotlib'
>
>
> ----------------------------------------------------------------------
> Ran 31 tests in 0.002s
>
> FAILED (errors=31)
> E: pybuild pybuild:352: test: plugin distutils failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_pynwb/build; python3.7 -m unittest discover -v
> dh_auto_test: error: pybuild --test -i python{version} -p "3.7 3.8" returned exit code 13
The full build log is available from:
http://qa-logs.debian.net/2020/04/02/pynwb_1.2.1-2_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
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