[Debian-med-packaging] Bug#957425: libbpp-phyl: ftbfs with GCC-10

[Matthias Klose]

Package: src:libbpp-phyl
Version: 2.4.1-3
Severity: normal
Tags: sid bullseye
User: debian-gcc at lists.debian.org
Usertags: ftbfs-gcc-10

Please keep this issue open in the bug tracker for the package it
was filed for.  If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.

The package fails to build in a test rebuild on at least amd64 with
gcc-10/g++-10, but succeeds to build with gcc-9/g++-9. The
severity of this report will be raised before the bullseye release,
so nothing has to be done for the buster release.

The full build log can be found at:
http://people.debian.org/~doko/logs/gcc10-20200225/libbpp-phyl_2.4.1-3_unstable_gcc10.log
The last lines of the build log are at the end of this report.

To build with GCC 10, either set CC=gcc-10 CXX=g++-10 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.

  apt-get -t=experimental install g++ 

Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-10/porting_to.html

[...]
@@ -6207,6 +6558,7 @@
  _ZTVN3bpp7YNGP_M9E at Base 2.4.1
  _ZTVN3bpp7YpR_GenE at Base 2.4.1
  _ZTVN3bpp7YpR_SymE at Base 2.4.1
+ _ZTVN3bpp8ClonableE at Base 2.4.1-3
  _ZTVN3bpp8YNGP_M10E at Base 2.4.1
  _ZTVN3bpp9CoalaCoreE at Base 2.4.1
  _ZTVN3bpp9ColMatrixIdEE at Base 2.4.1
@@ -6480,7 +6832,7 @@
  _ZTch0_v0_n248_NK3bpp4MG945cloneEv at Base 2.4.1
  _ZTch0_v0_n248_NK3bpp4YN985cloneEv at Base 2.4.1
  _ZTch0_v0_n280_NK3bpp13MetaOptimizer5cloneEv at Base 2.4.1
- _ZTch0_v0_n280_NK3bpp17BrentOneDimension5cloneEv at Base 2.4.1
+#MISSING: 2.4.1-3# _ZTch0_v0_n280_NK3bpp17BrentOneDimension5cloneEv at Base 2.4.1
  _ZTch0_v0_n280_NK3bpp21PseudoNewtonOptimizer5cloneEv at Base 2.4.1
  _ZTch0_v0_n40_N3bpp26RHomogeneousTreeLikelihood17getLikelihoodDataEv at Base 2.4.1
  _ZTch0_v0_n40_N3bpp27DRHomogeneousTreeLikelihood17getLikelihoodDataEv at Base 2.4.1
@@ -6508,7 +6860,7 @@
  _ZTch0_v0_n40_NK3bpp15StlOutputStream5cloneEv at Base 2.4.1
  _ZTch0_v0_n40_NK3bpp16BranchLikelihood5cloneEv at Base 2.4.1
  _ZTch0_v0_n40_NK3bpp16GCFrequenciesSet5cloneEv at Base 2.4.1
- _ZTch0_v0_n40_NK3bpp17BrentOneDimension5cloneEv at Base 2.4.1
+#MISSING: 2.4.1-3# _ZTch0_v0_n40_NK3bpp17BrentOneDimension5cloneEv at Base 2.4.1
  _ZTch0_v0_n40_NK3bpp17CanonicalStateMap5cloneEv at Base 2.4.1
  _ZTch0_v0_n40_NK3bpp17MvaFrequenciesSet5cloneEv at Base 2.4.1
  _ZTch0_v0_n40_NK3bpp17OptimizationTools13ScaleFunction5cloneEv at Base 2.4.1
@@ -7133,7 +7485,7 @@
  _ZTcv0_n32_v0_n248_NK3bpp4MG945cloneEv at Base 2.4.1
  _ZTcv0_n32_v0_n248_NK3bpp4YN985cloneEv at Base 2.4.1
  _ZTcv0_n32_v0_n280_NK3bpp13MetaOptimizer5cloneEv at Base 2.4.1
- _ZTcv0_n32_v0_n280_NK3bpp17BrentOneDimension5cloneEv at Base 2.4.1
+#MISSING: 2.4.1-3# _ZTcv0_n32_v0_n280_NK3bpp17BrentOneDimension5cloneEv at Base 2.4.1
  _ZTcv0_n32_v0_n280_NK3bpp21PseudoNewtonOptimizer5cloneEv at Base 2.4.1
  _ZTcv0_n32_v0_n40_NK3bpp10BppBoolean5cloneEv at Base 2.4.1
  _ZTcv0_n32_v0_n40_NK3bpp11LG10_EX_EHO13EmbeddedModel5cloneEv at Base 2.4.1
@@ -7157,7 +7509,7 @@
  _ZTcv0_n32_v0_n40_NK3bpp15StlOutputStream5cloneEv at Base 2.4.1
  _ZTcv0_n32_v0_n40_NK3bpp16BranchLikelihood5cloneEv at Base 2.4.1
  _ZTcv0_n32_v0_n40_NK3bpp16GCFrequenciesSet5cloneEv at Base 2.4.1
- _ZTcv0_n32_v0_n40_NK3bpp17BrentOneDimension5cloneEv at Base 2.4.1
+#MISSING: 2.4.1-3# _ZTcv0_n32_v0_n40_NK3bpp17BrentOneDimension5cloneEv at Base 2.4.1
  _ZTcv0_n32_v0_n40_NK3bpp17CanonicalStateMap5cloneEv at Base 2.4.1
  _ZTcv0_n32_v0_n40_NK3bpp17MvaFrequenciesSet5cloneEv at Base 2.4.1
  _ZTcv0_n32_v0_n40_NK3bpp17OptimizationTools13ScaleFunction5cloneEv at Base 2.4.1
@@ -8147,6 +8499,7 @@
  _ZTv0_n24_N3bpp24BppOFrequenciesSetFormatD0Ev at Base 2.4.1
  _ZTv0_n24_N3bpp24BppOFrequenciesSetFormatD1Ev at Base 2.4.1
  _ZTv0_n24_N3bpp24BppOParametrizableFormatD0Ev at Base 2.4.1
+ _ZTv0_n24_N3bpp24BppOParametrizableFormatD1Ev at Base 2.4.1-3
  _ZTv0_n24_N3bpp24ConstantRateDistributionD0Ev at Base 2.4.1
  _ZTv0_n24_N3bpp24ConstantRateDistributionD1Ev at Base 2.4.1
  _ZTv0_n24_N3bpp24DRASDRTreeLikelihoodDataD0Ev at Base 2.4.1
@@ -8198,6 +8551,7 @@
  _ZTv0_n24_N3bpp26RHomogeneousTreeLikelihoodD0Ev at Base 2.4.1
  _ZTv0_n24_N3bpp26RHomogeneousTreeLikelihoodD1Ev at Base 2.4.1
  _ZTv0_n24_N3bpp26SimpleDiscreteDistributionD0Ev at Base 2.4.1
+ _ZTv0_n24_N3bpp26SimpleDiscreteDistributionD1Ev at Base 2.4.1-3
  _ZTv0_n24_N3bpp27BppOSubstitutionModelFormatD0Ev at Base 2.4.1
  _ZTv0_n24_N3bpp27BppOSubstitutionModelFormatD1Ev at Base 2.4.1
  _ZTv0_n24_N3bpp27CodonAdHocSubstitutionModelD0Ev at Base 2.4.1
@@ -9362,5 +9716,6 @@
  _ZTv0_n96_NK3bpp24DRASDRTreeLikelihoodData24getNumberOfDistinctSitesEv at Base 2.4.1
  _ZTv0_n96_NK3bpp26TreeDrawingListenerAdapter12isAutonomousEv at Base 2.4.1
  _ZTv0_n96_NK3bpp28NNIHomogeneousTreeLikelihood16getTopologyValueEv at Base 2.4.1
+ _ZZNSt8__detail18__to_chars_10_implImEEvPcjT_E8__digits at Base 2.4.1-3
  _Zlt12StringAndIntS_ at Base 2.4.1
  _Zlt9IntAndIntS_ at Base 2.4.1
dh_makeshlibs: error: failing due to earlier errors
make: *** [debian/rules:10: binary] Error 25
dpkg-buildpackage: error: fakeroot debian/rules binary subprocess returned exit status 2