[Debian-med-packaging] Bug#957552: mmseqs2: ftbfs with GCC-10
Matthias Klose
doko at debian.org
Fri Apr 17 12:06:22 BST 2020
Package: src:mmseqs2
Version: 10-6d92c+ds-2
Severity: normal
Tags: sid bullseye
User: debian-gcc at lists.debian.org
Usertags: ftbfs-gcc-10
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-10/g++-10, but succeeds to build with gcc-9/g++-9. The
severity of this report will be raised before the bullseye release,
so nothing has to be done for the buster release.
The full build log can be found at:
http://people.debian.org/~doko/logs/gcc10-20200225/mmseqs2_10-6d92c+ds-2_unstable_gcc10.log
The last lines of the build log are at the end of this report.
To build with GCC 10, either set CC=gcc-10 CXX=g++-10 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-10/porting_to.html
[...]
[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DAVX2=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<<PKGBUILDDIR>>/lib/tinyexpr -I/<<PKGBUILDDIR>>/lib -I/<<PKGBUILDDIR>>/lib/simd -I/<<PKGBUILDDIR>>/lib/alp -I/<<PKGBUILDDIR>>/lib/cacode -I/<<PKGBUILDDIR>>/lib/ksw2 -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/generated -I/<<PKGBUILDDIR>>/src/alignment -I/<<PKGBUILDDIR>>/src/clustering -I/<<PKGBUILDDIR>>/src/commons -I/<<PKGBUILDDIR>>/src/multihit -I/<<PKGBUILDDIR>>/src/prefiltering -I/<<PKGBUILDDIR>>/src/linclust -I/<<PKGBUILDDIR>>/src/taxonomy -I/<<PKGBUILDDIR>>/src/util -I/<<PKGBUILDDIR>>/src/. -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -mavx2 -mfpmath=sse -Wa,-q -std=c++0x -fno-exceptions -pedantic -Wall -Wextra -Wdisabled-optimization -march=native -mavx2 -mfpmath=sse -Wa,-q -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -c /<<PKGBUILDDIR>>/src/clustering/ClusteringAlgorithms.cpp
[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DAVX2=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<<PKGBUILDDIR>>/lib/tinyexpr -I/<<PKGBUILDDIR>>/lib -I/<<PKGBUILDDIR>>/lib/simd -I/<<PKGBUILDDIR>>/lib/alp -I/<<PKGBUILDDIR>>/lib/cacode -I/<<PKGBUILDDIR>>/lib/ksw2 -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/generated -I/<<PKGBUILDDIR>>/src/alignment -I/<<PKGBUILDDIR>>/src/clustering -I/<<PKGBUILDDIR>>/src/commons -I/<<PKGBUILDDIR>>/src/multihit -I/<<PKGBUILDDIR>>/src/prefiltering -I/<<PKGBUILDDIR>>/src/linclust -I/<<PKGBUILDDIR>>/src/taxonomy -I/<<PKGBUILDDIR>>/src/util -I/<<PKGBUILDDIR>>/src/. -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -mavx2 -mfpmath=sse -Wa,-q -std=c++0x -fno-exceptions -pedantic -Wall -Wextra -Wdisabled-optimization -march=native -mavx2 -mfpmath=sse -Wa,-q -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -c /<<PKGBUILDDIR>>/src/commons/A3MReader.cpp
[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DAVX2=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<<PKGBUILDDIR>>/lib/tinyexpr -I/<<PKGBUILDDIR>>/lib -I/<<PKGBUILDDIR>>/lib/simd -I/<<PKGBUILDDIR>>/lib/alp -I/<<PKGBUILDDIR>>/lib/cacode -I/<<PKGBUILDDIR>>/lib/ksw2 -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/generated -I/<<PKGBUILDDIR>>/src/alignment -I/<<PKGBUILDDIR>>/src/clustering -I/<<PKGBUILDDIR>>/src/commons -I/<<PKGBUILDDIR>>/src/multihit -I/<<PKGBUILDDIR>>/src/prefiltering -I/<<PKGBUILDDIR>>/src/linclust -I/<<PKGBUILDDIR>>/src/taxonomy -I/<<PKGBUILDDIR>>/src/util -I/<<PKGBUILDDIR>>/src/. -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -mavx2 -mfpmath=sse -Wa,-q -std=c++0x -fno-exceptions -pedantic -Wall -Wextra -Wdisabled-optimization -march=native -mavx2 -mfpmath=sse -Wa,-q -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -c /<<PKGBUILDDIR>>/src/commons/Application.cpp
[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DAVX2=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<<PKGBUILDDIR>>/lib/tinyexpr -I/<<PKGBUILDDIR>>/lib -I/<<PKGBUILDDIR>>/lib/simd -I/<<PKGBUILDDIR>>/lib/alp -I/<<PKGBUILDDIR>>/lib/cacode -I/<<PKGBUILDDIR>>/lib/ksw2 -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/generated -I/<<PKGBUILDDIR>>/src/alignment -I/<<PKGBUILDDIR>>/src/clustering -I/<<PKGBUILDDIR>>/src/commons -I/<<PKGBUILDDIR>>/src/multihit -I/<<PKGBUILDDIR>>/src/prefiltering -I/<<PKGBUILDDIR>>/src/linclust -I/<<PKGBUILDDIR>>/src/taxonomy -I/<<PKGBUILDDIR>>/src/util -I/<<PKGBUILDDIR>>/src/. -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -mavx2 -mfpmath=sse -Wa,-q -std=c++0x -fno-exceptions -pedantic -Wall -Wextra -Wdisabled-optimization -march=native -mavx2 -mfpmath=sse -Wa,-q -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -c /<<PKGBUILDDIR>>/src/commons/BaseMatrix.cpp
[ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DAVX2=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<<PKGBUILDDIR>>/lib/tinyexpr -I/<<PKGBUILDDIR>>/lib -I/<<PKGBUILDDIR>>/lib/simd -I/<<PKGBUILDDIR>>/lib/alp -I/<<PKGBUILDDIR>>/lib/cacode -I/<<PKGBUILDDIR>>/lib/ksw2 -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/generated -I/<<PKGBUILDDIR>>/src/alignment -I/<<PKGBUILDDIR>>/src/clustering -I/<<PKGBUILDDIR>>/src/commons -I/<<PKGBUILDDIR>>/src/multihit -I/<<PKGBUILDDIR>>/src/prefiltering -I/<<PKGBUILDDIR>>/src/linclust -I/<<PKGBUILDDIR>>/src/taxonomy -I/<<PKGBUILDDIR>>/src/util -I/<<PKGBUILDDIR>>/src/. -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -mavx2 -mfpmath=sse -Wa,-q -std=c++0x -fno-exceptions -pedantic -Wall -Wextra -Wdisabled-optimization -march=native -mavx2 -mfpmath=sse -Wa,-q -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -c /<<PKGBUILDDIR>>/src/commons/Command.cpp
[ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DAVX2=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<<PKGBUILDDIR>>/lib/tinyexpr -I/<<PKGBUILDDIR>>/lib -I/<<PKGBUILDDIR>>/lib/simd -I/<<PKGBUILDDIR>>/lib/alp -I/<<PKGBUILDDIR>>/lib/cacode -I/<<PKGBUILDDIR>>/lib/ksw2 -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/generated -I/<<PKGBUILDDIR>>/src/alignment -I/<<PKGBUILDDIR>>/src/clustering -I/<<PKGBUILDDIR>>/src/commons -I/<<PKGBUILDDIR>>/src/multihit -I/<<PKGBUILDDIR>>/src/prefiltering -I/<<PKGBUILDDIR>>/src/linclust -I/<<PKGBUILDDIR>>/src/taxonomy -I/<<PKGBUILDDIR>>/src/util -I/<<PKGBUILDDIR>>/src/. -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -mavx2 -mfpmath=sse -Wa,-q -std=c++0x -fno-exceptions -pedantic -Wall -Wextra -Wdisabled-optimization -march=native -mavx2 -mfpmath=sse -Wa,-q -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /<<PKGBUILDDIR>>/src/commons/CommandCaller.cpp
[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DAVX2=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<<PKGBUILDDIR>>/lib/tinyexpr -I/<<PKGBUILDDIR>>/lib -I/<<PKGBUILDDIR>>/lib/simd -I/<<PKGBUILDDIR>>/lib/alp -I/<<PKGBUILDDIR>>/lib/cacode -I/<<PKGBUILDDIR>>/lib/ksw2 -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/generated -I/<<PKGBUILDDIR>>/src/alignment -I/<<PKGBUILDDIR>>/src/clustering -I/<<PKGBUILDDIR>>/src/commons -I/<<PKGBUILDDIR>>/src/multihit -I/<<PKGBUILDDIR>>/src/prefiltering -I/<<PKGBUILDDIR>>/src/linclust -I/<<PKGBUILDDIR>>/src/taxonomy -I/<<PKGBUILDDIR>>/src/util -I/<<PKGBUILDDIR>>/src/. -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -mavx2 -mfpmath=sse -Wa,-q -std=c++0x -fno-exceptions -pedantic -Wall -Wextra -Wdisabled-optimization -march=native -mavx2 -mfpmath=sse -Wa,-q -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -c /<<PKGBUILDDIR>>/src/commons/DBConcat.cpp
[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DAVX2=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<<PKGBUILDDIR>>/lib/tinyexpr -I/<<PKGBUILDDIR>>/lib -I/<<PKGBUILDDIR>>/lib/simd -I/<<PKGBUILDDIR>>/lib/alp -I/<<PKGBUILDDIR>>/lib/cacode -I/<<PKGBUILDDIR>>/lib/ksw2 -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/generated -I/<<PKGBUILDDIR>>/src/alignment -I/<<PKGBUILDDIR>>/src/clustering -I/<<PKGBUILDDIR>>/src/commons -I/<<PKGBUILDDIR>>/src/multihit -I/<<PKGBUILDDIR>>/src/prefiltering -I/<<PKGBUILDDIR>>/src/linclust -I/<<PKGBUILDDIR>>/src/taxonomy -I/<<PKGBUILDDIR>>/src/util -I/<<PKGBUILDDIR>>/src/. -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -mavx2 -mfpmath=sse -Wa,-q -std=c++0x -fno-exceptions -pedantic -Wall -Wextra -Wdisabled-optimization -march=native -mavx2 -mfpmath=sse -Wa,-q -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -c /<<PKGBUILDDIR>>/src/commons/DBReader.cpp
[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DAVX2=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<<PKGBUILDDIR>>/lib/tinyexpr -I/<<PKGBUILDDIR>>/lib -I/<<PKGBUILDDIR>>/lib/simd -I/<<PKGBUILDDIR>>/lib/alp -I/<<PKGBUILDDIR>>/lib/cacode -I/<<PKGBUILDDIR>>/lib/ksw2 -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/generated -I/<<PKGBUILDDIR>>/src/alignment -I/<<PKGBUILDDIR>>/src/clustering -I/<<PKGBUILDDIR>>/src/commons -I/<<PKGBUILDDIR>>/src/multihit -I/<<PKGBUILDDIR>>/src/prefiltering -I/<<PKGBUILDDIR>>/src/linclust -I/<<PKGBUILDDIR>>/src/taxonomy -I/<<PKGBUILDDIR>>/src/util -I/<<PKGBUILDDIR>>/src/. -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -mavx2 -mfpmath=sse -Wa,-q -std=c++0x -fno-exceptions -pedantic -Wall -Wextra -Wdisabled-optimization -march=native -mavx2 -mfpmath=sse -Wa,-q -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -c /<<PKGBUILDDIR>>/src/commons/DBWriter.cpp
[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DAVX2=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<<PKGBUILDDIR>>/lib/tinyexpr -I/<<PKGBUILDDIR>>/lib -I/<<PKGBUILDDIR>>/lib/simd -I/<<PKGBUILDDIR>>/lib/alp -I/<<PKGBUILDDIR>>/lib/cacode -I/<<PKGBUILDDIR>>/lib/ksw2 -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/generated -I/<<PKGBUILDDIR>>/src/alignment -I/<<PKGBUILDDIR>>/src/clustering -I/<<PKGBUILDDIR>>/src/commons -I/<<PKGBUILDDIR>>/src/multihit -I/<<PKGBUILDDIR>>/src/prefiltering -I/<<PKGBUILDDIR>>/src/linclust -I/<<PKGBUILDDIR>>/src/taxonomy -I/<<PKGBUILDDIR>>/src/util -I/<<PKGBUILDDIR>>/src/. -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -mavx2 -mfpmath=sse -Wa,-q -std=c++0x -fno-exceptions -pedantic -Wall -Wextra -Wdisabled-optimization -march=native -mavx2 -mfpmath=sse -Wa,-q -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -c /<<PKGBUILDDIR>>/src/commons/Debug.cpp
[ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DAVX2=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<<PKGBUILDDIR>>/lib/tinyexpr -I/<<PKGBUILDDIR>>/lib -I/<<PKGBUILDDIR>>/lib/simd -I/<<PKGBUILDDIR>>/lib/alp -I/<<PKGBUILDDIR>>/lib/cacode -I/<<PKGBUILDDIR>>/lib/ksw2 -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/generated -I/<<PKGBUILDDIR>>/src/alignment -I/<<PKGBUILDDIR>>/src/clustering -I/<<PKGBUILDDIR>>/src/commons -I/<<PKGBUILDDIR>>/src/multihit -I/<<PKGBUILDDIR>>/src/prefiltering -I/<<PKGBUILDDIR>>/src/linclust -I/<<PKGBUILDDIR>>/src/taxonomy -I/<<PKGBUILDDIR>>/src/util -I/<<PKGBUILDDIR>>/src/. -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -mavx2 -mfpmath=sse -Wa,-q -std=c++0x -fno-exceptions -pedantic -Wall -Wextra -Wdisabled-optimization -march=native -mavx2 -mfpmath=sse -Wa,-q -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -c /<<PKGBUILDDIR>>/src/commons/ExpressionParser.cpp
[ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DAVX2=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<<PKGBUILDDIR>>/lib/tinyexpr -I/<<PKGBUILDDIR>>/lib -I/<<PKGBUILDDIR>>/lib/simd -I/<<PKGBUILDDIR>>/lib/alp -I/<<PKGBUILDDIR>>/lib/cacode -I/<<PKGBUILDDIR>>/lib/ksw2 -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/generated -I/<<PKGBUILDDIR>>/src/alignment -I/<<PKGBUILDDIR>>/src/clustering -I/<<PKGBUILDDIR>>/src/commons -I/<<PKGBUILDDIR>>/src/multihit -I/<<PKGBUILDDIR>>/src/prefiltering -I/<<PKGBUILDDIR>>/src/linclust -I/<<PKGBUILDDIR>>/src/taxonomy -I/<<PKGBUILDDIR>>/src/util -I/<<PKGBUILDDIR>>/src/. -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -mavx2 -mfpmath=sse -Wa,-q -std=c++0x -fno-exceptions -pedantic -Wall -Wextra -Wdisabled-optimization -march=native -mavx2 -mfpmath=sse -Wa,-q -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -c /<<PKGBUILDDIR>>/src/commons/FileUtil.cpp
[ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DAVX2=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<<PKGBUILDDIR>>/lib/tinyexpr -I/<<PKGBUILDDIR>>/lib -I/<<PKGBUILDDIR>>/lib/simd -I/<<PKGBUILDDIR>>/lib/alp -I/<<PKGBUILDDIR>>/lib/cacode -I/<<PKGBUILDDIR>>/lib/ksw2 -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/generated -I/<<PKGBUILDDIR>>/src/alignment -I/<<PKGBUILDDIR>>/src/clustering -I/<<PKGBUILDDIR>>/src/commons -I/<<PKGBUILDDIR>>/src/multihit -I/<<PKGBUILDDIR>>/src/prefiltering -I/<<PKGBUILDDIR>>/src/linclust -I/<<PKGBUILDDIR>>/src/taxonomy -I/<<PKGBUILDDIR>>/src/util -I/<<PKGBUILDDIR>>/src/. -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -mavx2 -mfpmath=sse -Wa,-q -std=c++0x -fno-exceptions -pedantic -Wall -Wextra -Wdisabled-optimization -march=native -mavx2 -mfpmath=sse -Wa,-q -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o -c /<<PKGBUILDDIR>>/src/commons/HeaderSummarizer.cpp
[ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DAVX2=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<<PKGBUILDDIR>>/lib/tinyexpr -I/<<PKGBUILDDIR>>/lib -I/<<PKGBUILDDIR>>/lib/simd -I/<<PKGBUILDDIR>>/lib/alp -I/<<PKGBUILDDIR>>/lib/cacode -I/<<PKGBUILDDIR>>/lib/ksw2 -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/generated -I/<<PKGBUILDDIR>>/src/alignment -I/<<PKGBUILDDIR>>/src/clustering -I/<<PKGBUILDDIR>>/src/commons -I/<<PKGBUILDDIR>>/src/multihit -I/<<PKGBUILDDIR>>/src/prefiltering -I/<<PKGBUILDDIR>>/src/linclust -I/<<PKGBUILDDIR>>/src/taxonomy -I/<<PKGBUILDDIR>>/src/util -I/<<PKGBUILDDIR>>/src/. -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -mavx2 -mfpmath=sse -Wa,-q -std=c++0x -fno-exceptions -pedantic -Wall -Wextra -Wdisabled-optimization -march=native -mavx2 -mfpmath=sse -Wa,-q -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o -c /<<PKGBUILDDIR>>/src/commons/KSeqWrapper.cpp
[ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DAVX2=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<<PKGBUILDDIR>>/lib/tinyexpr -I/<<PKGBUILDDIR>>/lib -I/<<PKGBUILDDIR>>/lib/simd -I/<<PKGBUILDDIR>>/lib/alp -I/<<PKGBUILDDIR>>/lib/cacode -I/<<PKGBUILDDIR>>/lib/ksw2 -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/generated -I/<<PKGBUILDDIR>>/src/alignment -I/<<PKGBUILDDIR>>/src/clustering -I/<<PKGBUILDDIR>>/src/commons -I/<<PKGBUILDDIR>>/src/multihit -I/<<PKGBUILDDIR>>/src/prefiltering -I/<<PKGBUILDDIR>>/src/linclust -I/<<PKGBUILDDIR>>/src/taxonomy -I/<<PKGBUILDDIR>>/src/util -I/<<PKGBUILDDIR>>/src/. -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -mavx2 -mfpmath=sse -Wa,-q -std=c++0x -fno-exceptions -pedantic -Wall -Wextra -Wdisabled-optimization -march=native -mavx2 -mfpmath=sse -Wa,-q -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o -c /<<PKGBUILDDIR>>/src/commons/MemoryMapped.cpp
[ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DAVX2=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<<PKGBUILDDIR>>/lib/tinyexpr -I/<<PKGBUILDDIR>>/lib -I/<<PKGBUILDDIR>>/lib/simd -I/<<PKGBUILDDIR>>/lib/alp -I/<<PKGBUILDDIR>>/lib/cacode -I/<<PKGBUILDDIR>>/lib/ksw2 -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/generated -I/<<PKGBUILDDIR>>/src/alignment -I/<<PKGBUILDDIR>>/src/clustering -I/<<PKGBUILDDIR>>/src/commons -I/<<PKGBUILDDIR>>/src/multihit -I/<<PKGBUILDDIR>>/src/prefiltering -I/<<PKGBUILDDIR>>/src/linclust -I/<<PKGBUILDDIR>>/src/taxonomy -I/<<PKGBUILDDIR>>/src/util -I/<<PKGBUILDDIR>>/src/. -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -mavx2 -mfpmath=sse -Wa,-q -std=c++0x -fno-exceptions -pedantic -Wall -Wextra -Wdisabled-optimization -march=native -mavx2 -mfpmath=sse -Wa,-q -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o -c /<<PKGBUILDDIR>>/src/commons/MMseqsMPI.cpp
[ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DAVX2=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<<PKGBUILDDIR>>/lib/tinyexpr -I/<<PKGBUILDDIR>>/lib -I/<<PKGBUILDDIR>>/lib/simd -I/<<PKGBUILDDIR>>/lib/alp -I/<<PKGBUILDDIR>>/lib/cacode -I/<<PKGBUILDDIR>>/lib/ksw2 -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/generated -I/<<PKGBUILDDIR>>/src/alignment -I/<<PKGBUILDDIR>>/src/clustering -I/<<PKGBUILDDIR>>/src/commons -I/<<PKGBUILDDIR>>/src/multihit -I/<<PKGBUILDDIR>>/src/prefiltering -I/<<PKGBUILDDIR>>/src/linclust -I/<<PKGBUILDDIR>>/src/taxonomy -I/<<PKGBUILDDIR>>/src/util -I/<<PKGBUILDDIR>>/src/. -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -mavx2 -mfpmath=sse -Wa,-q -std=c++0x -fno-exceptions -pedantic -Wall -Wextra -Wdisabled-optimization -march=native -mavx2 -mfpmath=sse -Wa,-q -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o -c /<<PKGBUILDDIR>>/src/commons/NucleotideMatrix.cpp
[ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DAVX2=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<<PKGBUILDDIR>>/lib/tinyexpr -I/<<PKGBUILDDIR>>/lib -I/<<PKGBUILDDIR>>/lib/simd -I/<<PKGBUILDDIR>>/lib/alp -I/<<PKGBUILDDIR>>/lib/cacode -I/<<PKGBUILDDIR>>/lib/ksw2 -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/generated -I/<<PKGBUILDDIR>>/src/alignment -I/<<PKGBUILDDIR>>/src/clustering -I/<<PKGBUILDDIR>>/src/commons -I/<<PKGBUILDDIR>>/src/multihit -I/<<PKGBUILDDIR>>/src/prefiltering -I/<<PKGBUILDDIR>>/src/linclust -I/<<PKGBUILDDIR>>/src/taxonomy -I/<<PKGBUILDDIR>>/src/util -I/<<PKGBUILDDIR>>/src/. -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -mavx2 -mfpmath=sse -Wa,-q -std=c++0x -fno-exceptions -pedantic -Wall -Wextra -Wdisabled-optimization -march=native -mavx2 -mfpmath=sse -Wa,-q -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o -c /<<PKGBUILDDIR>>/src/commons/Orf.cpp
[ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DAVX2=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<<PKGBUILDDIR>>/lib/tinyexpr -I/<<PKGBUILDDIR>>/lib -I/<<PKGBUILDDIR>>/lib/simd -I/<<PKGBUILDDIR>>/lib/alp -I/<<PKGBUILDDIR>>/lib/cacode -I/<<PKGBUILDDIR>>/lib/ksw2 -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/generated -I/<<PKGBUILDDIR>>/src/alignment -I/<<PKGBUILDDIR>>/src/clustering -I/<<PKGBUILDDIR>>/src/commons -I/<<PKGBUILDDIR>>/src/multihit -I/<<PKGBUILDDIR>>/src/prefiltering -I/<<PKGBUILDDIR>>/src/linclust -I/<<PKGBUILDDIR>>/src/taxonomy -I/<<PKGBUILDDIR>>/src/util -I/<<PKGBUILDDIR>>/src/. -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -mavx2 -mfpmath=sse -Wa,-q -std=c++0x -fno-exceptions -pedantic -Wall -Wextra -Wdisabled-optimization -march=native -mavx2 -mfpmath=sse -Wa,-q -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o -c /<<PKGBUILDDIR>>/src/commons/Parameters.cpp
[ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DAVX2=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<<PKGBUILDDIR>>/lib/tinyexpr -I/<<PKGBUILDDIR>>/lib -I/<<PKGBUILDDIR>>/lib/simd -I/<<PKGBUILDDIR>>/lib/alp -I/<<PKGBUILDDIR>>/lib/cacode -I/<<PKGBUILDDIR>>/lib/ksw2 -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/generated -I/<<PKGBUILDDIR>>/src/alignment -I/<<PKGBUILDDIR>>/src/clustering -I/<<PKGBUILDDIR>>/src/commons -I/<<PKGBUILDDIR>>/src/multihit -I/<<PKGBUILDDIR>>/src/prefiltering -I/<<PKGBUILDDIR>>/src/linclust -I/<<PKGBUILDDIR>>/src/taxonomy -I/<<PKGBUILDDIR>>/src/util -I/<<PKGBUILDDIR>>/src/. -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -mavx2 -mfpmath=sse -Wa,-q -std=c++0x -fno-exceptions -pedantic -Wall -Wextra -Wdisabled-optimization -march=native -mavx2 -mfpmath=sse -Wa,-q -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o -c /<<PKGBUILDDIR>>/src/commons/ProfileStates.cpp
[ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DAVX2=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<<PKGBUILDDIR>>/lib/tinyexpr -I/<<PKGBUILDDIR>>/lib -I/<<PKGBUILDDIR>>/lib/simd -I/<<PKGBUILDDIR>>/lib/alp -I/<<PKGBUILDDIR>>/lib/cacode -I/<<PKGBUILDDIR>>/lib/ksw2 -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/generated -I/<<PKGBUILDDIR>>/src/alignment -I/<<PKGBUILDDIR>>/src/clustering -I/<<PKGBUILDDIR>>/src/commons -I/<<PKGBUILDDIR>>/src/multihit -I/<<PKGBUILDDIR>>/src/prefiltering -I/<<PKGBUILDDIR>>/src/linclust -I/<<PKGBUILDDIR>>/src/taxonomy -I/<<PKGBUILDDIR>>/src/util -I/<<PKGBUILDDIR>>/src/. -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -mavx2 -mfpmath=sse -Wa,-q -std=c++0x -fno-exceptions -pedantic -Wall -Wextra -Wdisabled-optimization -march=native -mavx2 -mfpmath=sse -Wa,-q -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -c /<<PKGBUILDDIR>>/src/commons/LibraryReader.cpp
[ 44%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ScoreMatrixFile.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DAVX2=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<<PKGBUILDDIR>>/lib/tinyexpr -I/<<PKGBUILDDIR>>/lib -I/<<PKGBUILDDIR>>/lib/simd -I/<<PKGBUILDDIR>>/lib/alp -I/<<PKGBUILDDIR>>/lib/cacode -I/<<PKGBUILDDIR>>/lib/ksw2 -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/generated -I/<<PKGBUILDDIR>>/src/alignment -I/<<PKGBUILDDIR>>/src/clustering -I/<<PKGBUILDDIR>>/src/commons -I/<<PKGBUILDDIR>>/src/multihit -I/<<PKGBUILDDIR>>/src/prefiltering -I/<<PKGBUILDDIR>>/src/linclust -I/<<PKGBUILDDIR>>/src/taxonomy -I/<<PKGBUILDDIR>>/src/util -I/<<PKGBUILDDIR>>/src/. -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -mavx2 -mfpmath=sse -Wa,-q -std=c++0x -fno-exceptions -pedantic -Wall -Wextra -Wdisabled-optimization -march=native -mavx2 -mfpmath=sse -Wa,-q -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/ScoreMatrixFile.cpp.o -c /<<PKGBUILDDIR>>/src/commons/ScoreMatrixFile.cpp
[ 44%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DAVX2=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<<PKGBUILDDIR>>/lib/tinyexpr -I/<<PKGBUILDDIR>>/lib -I/<<PKGBUILDDIR>>/lib/simd -I/<<PKGBUILDDIR>>/lib/alp -I/<<PKGBUILDDIR>>/lib/cacode -I/<<PKGBUILDDIR>>/lib/ksw2 -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/generated -I/<<PKGBUILDDIR>>/src/alignment -I/<<PKGBUILDDIR>>/src/clustering -I/<<PKGBUILDDIR>>/src/commons -I/<<PKGBUILDDIR>>/src/multihit -I/<<PKGBUILDDIR>>/src/prefiltering -I/<<PKGBUILDDIR>>/src/linclust -I/<<PKGBUILDDIR>>/src/taxonomy -I/<<PKGBUILDDIR>>/src/util -I/<<PKGBUILDDIR>>/src/. -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -mavx2 -mfpmath=sse -Wa,-q -std=c++0x -fno-exceptions -pedantic -Wall -Wextra -Wdisabled-optimization -march=native -mavx2 -mfpmath=sse -Wa,-q -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o -c /<<PKGBUILDDIR>>/src/commons/Sequence.cpp
[ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DAVX2=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<<PKGBUILDDIR>>/lib/tinyexpr -I/<<PKGBUILDDIR>>/lib -I/<<PKGBUILDDIR>>/lib/simd -I/<<PKGBUILDDIR>>/lib/alp -I/<<PKGBUILDDIR>>/lib/cacode -I/<<PKGBUILDDIR>>/lib/ksw2 -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/generated -I/<<PKGBUILDDIR>>/src/alignment -I/<<PKGBUILDDIR>>/src/clustering -I/<<PKGBUILDDIR>>/src/commons -I/<<PKGBUILDDIR>>/src/multihit -I/<<PKGBUILDDIR>>/src/prefiltering -I/<<PKGBUILDDIR>>/src/linclust -I/<<PKGBUILDDIR>>/src/taxonomy -I/<<PKGBUILDDIR>>/src/util -I/<<PKGBUILDDIR>>/src/. -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -mavx2 -mfpmath=sse -Wa,-q -std=c++0x -fno-exceptions -pedantic -Wall -Wextra -Wdisabled-optimization -march=native -mavx2 -mfpmath=sse -Wa,-q -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -c /<<PKGBUILDDIR>>/src/commons/SubstitutionMatrix.cpp
/<<PKGBUILDDIR>>/src/commons/Sequence.cpp: In member function ‘std::pair<const char*, unsigned int> Sequence::getSpacedPattern(bool, unsigned int)’:
/<<PKGBUILDDIR>>/src/commons/Sequence.cpp:165:55: error: cannot bind rvalue reference of type ‘const char*&&’ to lvalue of type ‘char*’
165 | return std::make_pair<const char *, unsigned int>(pattern, static_cast<unsigned int>(pair.second));
| ^~~~~~~
In file included from /usr/include/c++/10/bits/stl_algobase.h:64,
from /usr/include/c++/10/vector:60,
from /<<PKGBUILDDIR>>/src/commons/MathUtil.h:8,
from /<<PKGBUILDDIR>>/src/commons/Sequence.h:8,
from /<<PKGBUILDDIR>>/src/commons/Sequence.cpp:1:
/usr/include/c++/10/bits/stl_pair.h:566:21: note: initializing argument 1 of ‘constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = const char*; _T2 = unsigned int; typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type = unsigned int; typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type = const char*]’
566 | make_pair(_T1&& __x, _T2&& __y)
| ~~~~~~^~~
make[3]: *** [src/CMakeFiles/mmseqs-framework.dir/build.make:521: src/CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o] Error 1
make[3]: *** Waiting for unfinished jobs....
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make[2]: *** [CMakeFiles/Makefile2:600: src/CMakeFiles/mmseqs-framework.dir/all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make[1]: *** [Makefile:133: all] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
dh_auto_build: error: cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" returned exit code 2
make: *** [debian/rules:13: build] Error 25
dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2
More information about the Debian-med-packaging
mailing list