[Debian-med-packaging] Bug#958459: ITP: pycoqc -- computes metrics and generates Interactive QC plots
Andreas Tille
tille at debian.org
Wed Apr 22 11:43:37 BST 2020
Package: wnpp
Severity: wishlist
Subject: ITP: pycoqc -- computes metrics and generates Interactive QC plots
Package: wnpp
Owner: Andreas Tille <tille at debian.org>
Severity: wishlist
* Package name : pycoqc
Version : 2.5.0.21
Upstream Author : Copyright: Copyright 2019 Adrien Leger & Tommaso Leonardi
* URL : https://github.com/a-slide/pycoQC
* License : GPL-3+
Programming Lang: Python
Description : computes metrics and generates Interactive QC plots
PycoQC computes metrics and generates interactive QC plots for Oxford
Nanopore technologies sequencing data
.
PycoQC relies on the sequencing_summary.txt file generated by Albacore
and Guppy, but if needed it can also generates a summary file from
basecalled fast5 files. The package supports 1D and 1D2 runs generated
with Minion, Gridion and Promethion devices and basecalled with Albacore
1.2.1+ or Guppy 2.1.3+
Remark: This package is maintained by Debian Med Packaging Team at
https://salsa.debian.org/med-team/pycoqc
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