[Debian-med-packaging] Bug#958951: ITP: python-pauvre -- QC and genome browser plotting Oxford Nanopore and PacBio long reads

[Andreas Tille]

Package: wnpp
Severity: wishlist

Subject: ITP: python-pauvre -- QC and genome browser plotting Oxford Nanopore and PacBio long reads
Package: wnpp
Owner: Andreas Tille <tille at debian.org>
Severity: wishlist

* Package name    : python-pauvre
  Version         : 0.1924
  Upstream Author : Darrin T. Schultz
* URL             : https://github.com/conchoecia/pauvre
* License         : GPL-3+
  Programming Lang: Python
  Description     : QC and genome browser plotting Oxford Nanopore and PacBio long reads
 Pauvre is a plotting package designed for nanopore and PacBio long reads.
 .
 This package currently hosts four scripts for plotting and/or printing stats.
 .
  pauvre marginplot
     Takes a fastq file as input and outputs a marginal histogram with a
     heatmap.
  pauvre stats
     Takes a fastq file as input and prints out a table of stats, including
     how many basepairs/reads there are for a length/mean quality cutoff.
     This is also automagically called when using pauvre marginplot
  pauvre redwood
     Method of representing circular genomes. A redwood plot contains long
     reads as "rings" on the inside, a gene annotation "cambrium/phloem",
     and a RNAseq "bark". The input is .bam files for the long reads and
     RNAseq data, and a .gff file for the annotation.
  pauvre synteny
     Makes a synteny plot of circular genomes. Finds the most parsimonius
     rotation to display the synteny of all the input genomes with the
     fewest crossings-over. Input is one .gff file per circular genome
     and one directory of gene alignments.

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/python-pauvre