[Debian-med-packaging] pauvre is missing sklearn despite the package is installed

[Andreas Tille]

Hi Étienne,

On Mon, Apr 27, 2020 at 08:44:23PM +0200, Étienne Mollier wrote:
> 
> I pushed a change which modifies the manifest in setup.py.  This
> did some good for running `pauvre -h`.  I believe testing can
> move forward.

Great.  Now the package builds and the build time test works.
Unfortunately the autopkgtest fails.  Its the command:

pauvre marginplot -f nanotest/reads.fastq.gz -y --filt_minqual 7 --fileform svg

...
Keeping reads that satisfy: length >= 0 and meanQual >= 0
/usr/lib/python3.8/_collections_abc.py:832: MatplotlibDeprecationWarning: 
The text.latex.unicode rcparam was deprecated in Matplotlib 3.0 and will be removed in 3.2.
  self[key] = other[key]
plotting in the following window:
        0 <= Q-score (x-axis) <= 14.0
        0 <= length  (y-axis) <= 223383

Traceback (most recent call last):
  File "/usr/bin/pauvre", line 11, in <module>
    load_entry_point('pauvre==0.1924', 'console_scripts', 'pauvre')()
  File "/usr/lib/python3/dist-packages/pauvre/pauvre_main.py", line 630, in main
    args.func(parser, args)
  File "/usr/lib/python3/dist-packages/pauvre/pauvre_main.py", line 64, in run_subtool
    submodule.run(args)
  File "/usr/lib/python3/dist-packages/pauvre/marginplot.py", line 403, in run
    margin_plot(df=df.dropna(), **vars(args))
  File "/usr/lib/python3/dist-packages/pauvre/marginplot.py", line 381, in margin_plot
    if kwargs["BASENAME"] is None and not kwargs["path"] is None:
KeyError: 'path'
...


The data are obtained from python3-nanoget-examples package.

Any idea what might be wrong here?

Kind regards

      Andreas.

-- 
http://fam-tille.de