[Debian-med-packaging] Bug#958840: kmer: autopkgtest regression: No module named 'localAlignerInterface'

[Andreas Tille]

Hi Antoni

On Sat, Apr 25, 2020 at 09:02:07PM +0200, Paul Gevers wrote:
> ...
> python3 /usr/bin/../lib/atac/bin/AtacDriver.py
> /tmp/autopkgtest-lxc.pom4prd4/downtmp/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended
> 
> Traceback (most recent call last):
>   File "/usr/bin/../lib/atac/bin/AtacDriver.py", line 26, in <module>
>     import localAlignerInterface
> ModuleNotFoundError: No module named 'localAlignerInterface'
> PYTHONPATH=/usr/bin/../lib/atac/lib
> Chainer failed.
> autopkgtest [14:11:24]: test atac-unit-test: -----------------------]

Since you helped with the Python3 port of kmer I wonder whether you
might have some idea how to fix this.  The module is available in

   atac-driver/chainer/localalign/localAlignerInterfacemodule.C

but for some reason it is not found.

Any help would be really appreciated.

Kind regards an thanks a lot for your initial help

     Andreas.

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