[Debian-med-packaging] pauvre is missing sklearn despite the package is installed

[Andreas Tille]

Hi Étienne,

On Tue, Apr 28, 2020 at 12:54:00PM +0200, Étienne Mollier wrote:
> > Keeping reads that satisfy: length >= 0 and meanQual >= 0
> > /usr/lib/python3.8/_collections_abc.py:832: MatplotlibDeprecationWarning: 
> > The text.latex.unicode rcparam was deprecated in Matplotlib 3.0 and will be removed in 3.2.
> >   self[key] = other[key]
> 
> The deprecation warning seems unrelated to the crash.

Yes.  But once you are talking to upstream it might sense to
forward this as well.
 
> > plotting in the following window:
> >         0 <= Q-score (x-axis) <= 14.0
> >         0 <= length  (y-axis) <= 223383
> > 
> > Traceback (most recent call last):
> >   File "/usr/bin/pauvre", line 11, in <module>
> >     load_entry_point('pauvre==0.1924', 'console_scripts', 'pauvre')()
> >   File "/usr/lib/python3/dist-packages/pauvre/pauvre_main.py", line 630, in main
> >     args.func(parser, args)
> >   File "/usr/lib/python3/dist-packages/pauvre/pauvre_main.py", line 64, in run_subtool
> >     submodule.run(args)
> >   File "/usr/lib/python3/dist-packages/pauvre/marginplot.py", line 403, in run
> >     margin_plot(df=df.dropna(), **vars(args))
> >   File "/usr/lib/python3/dist-packages/pauvre/marginplot.py", line 381, in margin_plot
> >     if kwargs["BASENAME"] is None and not kwargs["path"] is None:
> > KeyError: 'path'
> > ...
> > 
> > 
> > The data are obtained from python3-nanoget-examples package.
> > 
> > Any idea what might be wrong here?
> 
> Checking for the availability of the key in the kwargs prior to
> dereferencing it seems to help moving forward:
> 
> 381:    if kwargs["BASENAME"] is None and "path" in kwargs and not kwargs["path"] is None:
>                                      +++++++++++++++++++++
> 
> Patching pauvre/marginplot.py in python-pauvre and bringing the
> issue to upstream should do the trick.  I can bring these
> changes this evening, unless you prefer to work on this this
> afternoon.

Thanks for the pointer.  I have sufficient other work to do so I'll
simply leave this for you. ;-)

Thanks a lot for checking anyway

       Andreas.

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