[Debian-med-packaging] Bug#966954: libstatgen: FTBFS: dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below
Lucas Nussbaum
lucas at debian.org
Mon Aug 3 09:41:36 BST 2020
Source: libstatgen
Version: 1.0.14-6
Severity: serious
Justification: FTBFS on amd64
Tags: bullseye sid ftbfs
Usertags: ftbfs-20200802 ftbfs-bullseye
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> mkdir -p debian/libstatgen-dev/usr/include/libStatGen/
> cp -L include/* debian/libstatgen-dev/usr/include/libStatGen/
> ln -s libStatGen.so.0 libStatGen.so
> d-shlibmove --commit \
> --multiarch \
> --devunversioned \
> --exclude-a \
> libStatGen.so
> Library package automatic movement utility
> set -e
> install -d -m 755 debian/libstatgen-dev/usr/lib/x86_64-linux-gnu
> install -d -m 755 debian/libstatgen0/usr/lib/x86_64-linux-gnu
> mv ./libStatGen.la debian/libstatgen-dev/usr/lib/x86_64-linux-gnu || true
> mv ./libStatGen.so debian/libstatgen-dev/usr/lib/x86_64-linux-gnu
> mv /<<PKGBUILDDIR>>/libStatGen.so.0 debian/libstatgen0/usr/lib/x86_64-linux-gnu
> PKGDEV=libstatgen-dev
> PKGSHL=libstatgen0
> mv: cannot stat './libStatGen.la': No such file or directory
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> dh_installdocs
> dh_installchangelogs
> dh_perl
> dh_link
> dh_strip_nondeterminism
> dh_compress
> dh_fixperms
> dh_missing
> dh_dwz
> dh_strip
> dh_makeshlibs
> dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below
> dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below
> dpkg-gensymbols: warning: debian/libstatgen0/DEBIAN/symbols doesn't match completely debian/libstatgen0.symbols
> --- debian/libstatgen0.symbols (libstatgen0_1.0.14-6_amd64)
> +++ dpkg-gensymbols9PvTtz 2020-08-02 17:21:28.397069852 +0000
> @@ -393,7 +393,7 @@
> (c++)"GzipHeader::readHeader(_IO_FILE*)@Base" 1.0.14
> (c++)"GzipHeader::~GzipHeader()@Base" 1.0.14
> (c++)"IndexBase::IndexBase()@Base" 1.0.14
> - (c++)"IndexBase::Reference::reset()@Base" 1.0.14
> +#MISSING: 1.0.14-6# (c++)"IndexBase::Reference::reset()@Base" 1.0.14
> (c++)"IndexBase::getBinsForRegion(unsigned int, unsigned int, bool*)@Base" 1.0.14
> (c++)"IndexBase::getMinOffsetFromLinearIndex(int, unsigned int, unsigned long&) const at Base" 1.0.14
> (c++)"IndexBase::getNumRefs() const at Base" 1.0.14
> @@ -557,7 +557,7 @@
> (c++)"MemoryMap::prefetch()@Base" 1.0.14
> (c++)"MemoryMap::test()@Base" 1.0.14
> (c++)"MemoryMap::~MemoryMap()@Base" 1.0.14
> - (c++)"MemoryMapArray<unsigned int, unsigned int, 2892766663u, 20090109u, &(unsigned int PackedAccess_1Bit<char*>(char*, unsigned int)), &(void PackedAssign_1Bit<char*>(char*, unsigned int, unsigned int)), &(Packed1BitElementCount2Bytes(unsigned int)), MemoryMapArrayHeader>::create(char const*, unsigned int, int)@Base" 1.0.14
> +#MISSING: 1.0.14-6# (c++)"MemoryMapArray<unsigned int, unsigned int, 2892766663u, 20090109u, &(unsigned int PackedAccess_1Bit<char*>(char*, unsigned int)), &(void PackedAssign_1Bit<char*>(char*, unsigned int, unsigned int)), &(Packed1BitElementCount2Bytes(unsigned int)), MemoryMapArrayHeader>::create(char const*, unsigned int, int)@Base" 1.0.14
> (c++)"MemoryMapArray<unsigned int, unsigned int, 460927905u, 20100401u, &(unsigned int PackedAccess_4Bit<char*>(char*, unsigned int)), &(void PackedAssign_4Bit<char*>(char*, unsigned int, unsigned int)), &(Packed4BitElementCount2Bytes(unsigned int)), genomeSequenceMmapHeader>::open(char const*, int)@Base" 1.0.14
> (c++)"MemoryMapArray<unsigned int, unsigned int, 460927905u, 20100401u, &(unsigned int PackedAccess_4Bit<char*>(char*, unsigned int)), &(void PackedAssign_4Bit<char*>(char*, unsigned int, unsigned int)), &(Packed4BitElementCount2Bytes(unsigned int)), genomeSequenceMmapHeader>::~MemoryMapArray()@Base" 1.0.14
> (c++)"MemoryMapArrayHeader::debugPrint(_IO_FILE*)@Base" 1.0.14
> @@ -1629,7 +1629,24 @@
> (c++)"VectorFunc::VectorFunc(double (*)(Vector&))@Base" 1.0.14
> (c++)"VectorFunc::~VectorFunc()@Base" 1.0.14
> _ZN11MiniDeflate14OutputLiteralsERPhiS1_RiP8_IO_FILE at Base 1.0.14
> - _ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_SaIS5_ENSt8__detail9_IdentityESt8equal_toIS5_ESt4hashIS5_ENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb1ELb1ELb1EEEE9_M_rehashEmRKm at Base 1.0.14
> + _ZN14MemoryMapArrayIjjLj460927905ELj20100401EXadL_Z17PackedAccess_4BitIPcEjT_jEEXadL_Z17PackedAssign_4BitIS1_EvS2_jjEEXadL_Z28Packed4BitElementCount2BytesjEE24genomeSequenceMmapHeaderE6createEPKcji at Base 1.0.14-6
> + _ZN8LongHashIiE6DeleteEj at Base 1.0.14-6
> + _ZN8LongHashIiE7SetSizeEi at Base 1.0.14-6
> +#MISSING: 1.0.14-6# _ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_SaIS5_ENSt8__detail9_IdentityESt8equal_toIS5_ESt4hashIS5_ENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb1ELb1ELb1EEEE9_M_rehashEmRKm at Base 1.0.14
> + _ZNSt12_Destroy_auxILb0EE9__destroyIP6StringEEvT_S4_ at Base 1.0.14-6
> + _ZNSt12_Destroy_auxILb0EE9__destroyIPN9IndexBase9ReferenceEEEvT_S5_ at Base 1.0.14-6
> + _ZNSt12_Vector_baseIN5Cigar13CigarOperatorESaIS1_EED1Ev at Base 1.0.14-6
> + _ZNSt12_Vector_baseIN5Cigar13CigarOperatorESaIS1_EED2Ev at Base 1.0.14-6
> + _ZNSt12_Vector_baseIP15SamHeaderRecordSaIS1_EED1Ev at Base 1.0.14-6
> + _ZNSt12_Vector_baseIP15SamHeaderRecordSaIS1_EED2Ev at Base 1.0.14-6
> + _ZNSt12_Vector_baseIcSaIcEED1Ev at Base 1.0.14-6
> + _ZNSt12_Vector_baseIcSaIcEED2Ev at Base 1.0.14-6
> + _ZNSt12_Vector_baseIfSaIfEED1Ev at Base 1.0.14-6
> + _ZNSt12_Vector_baseIfSaIfEED2Ev at Base 1.0.14-6
> + _ZNSt12_Vector_baseIiSaIiEED1Ev at Base 1.0.14-6
> + _ZNSt12_Vector_baseIiSaIiEED2Ev at Base 1.0.14-6
> + _ZNSt22__uninitialized_fill_nILb0EE15__uninit_fill_nIPSt6vectorIbSaIbEEmS4_EET_S6_T0_RKT1_ at Base 1.0.14-6
> + _ZNSt6vectorIP12SamHeaderTagSaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_ at Base 1.0.14-6
> _ZNSt6vectorIcSaIcEE17_M_realloc_insertIJcEEEvN9__gnu_cxx17__normal_iteratorIPcS1_EEDpOT_ at Base 1.0.14
> _ZNSt6vectorIfSaIfEE17_M_realloc_insertIJRKfEEEvN9__gnu_cxx17__normal_iteratorIPfS1_EEDpOT_ at Base 1.0.14
> _ZNSt6vectorIfSaIfEE17_M_realloc_insertIJfEEEvN9__gnu_cxx17__normal_iteratorIPfS1_EEDpOT_ at Base 1.0.14
> @@ -1718,30 +1735,30 @@
> (c++)"std::_Hashtable<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::__detail::_Identity, std::equal_to<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::hash<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, true, true> >::_M_find_before_node(unsigned long, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long) const at Base" 1.0.14
> (c++)"std::_Hashtable<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::__detail::_Identity, std::equal_to<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::hash<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, true, true> >::clear()@Base" 1.0.14
> (c++)"std::_Hashtable<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::__detail::_Identity, std::equal_to<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::hash<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, true, true> >::find(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)@Base" 1.0.14
> - (c++)"std::_Hashtable<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::__detail::_Identity, std::equal_to<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::hash<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, true, true> >::~_Hashtable()@Base" 1.0.14
> - (c++)"std::_Rb_tree<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::_Identity<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::_M_erase(std::_Rb_tree_node<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*)@Base" 1.0.14
> +#MISSING: 1.0.14-6# (c++)"std::_Hashtable<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::__detail::_Identity, std::equal_to<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::hash<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, true, true> >::~_Hashtable()@Base" 1.0.14
> +#MISSING: 1.0.14-6# (c++)"std::_Rb_tree<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::_Identity<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::_M_erase(std::_Rb_tree_node<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*)@Base" 1.0.14
> (c++)"std::_Rb_tree<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::_Identity<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::_M_get_insert_unique_pos(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)@Base" 1.0.14
> (c++)"std::_Rb_tree<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::_Identity<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::find(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const at Base" 1.0.14
> - (c++)"std::_Rb_tree<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, NonOverlapRegionPos>, std::_Select1st<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, NonOverlapRegionPos> >, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, NonOverlapRegionPos> > >::_M_erase(std::_Rb_tree_node<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, NonOverlapRegionPos> >*)@Base" 1.0.14
> +#MISSING: 1.0.14-6# (c++)"std::_Rb_tree<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, NonOverlapRegionPos>, std::_Select1st<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, NonOverlapRegionPos> >, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, NonOverlapRegionPos> > >::_M_erase(std::_Rb_tree_node<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, NonOverlapRegionPos> >*)@Base" 1.0.14
> (c++)"std::_Rb_tree<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, NonOverlapRegionPos>, std::_Select1st<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, NonOverlapRegionPos> >, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, NonOverlapRegionPos> > >::_M_get_insert_hint_unique_pos(std::_Rb_tree_const_iterator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, NonOverlapRegionPos> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)@Base" 1.0.14
> (c++)"std::_Rb_tree<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, NonOverlapRegionPos>, std::_Select1st<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, NonOverlapRegionPos> >, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, NonOverlapRegionPos> > >::_M_get_insert_unique_pos(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)@Base" 1.0.14
> - (c++)"std::_Rb_tree<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned int>, std::_Select1st<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned int> >, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned int> > >::_M_erase(std::_Rb_tree_node<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned int> >*)@Base" 1.0.14
> - (c++)"std::_Rb_tree<unsigned long, std::pair<unsigned long const, Chunk>, std::_Select1st<std::pair<unsigned long const, Chunk> >, std::less<unsigned long>, std::allocator<std::pair<unsigned long const, Chunk> > >::_M_erase(std::_Rb_tree_node<std::pair<unsigned long const, Chunk> >*)@Base" 1.0.14
> - (c++)"std::_Rb_tree<unsigned long, std::pair<unsigned long const, Chunk>, std::_Select1st<std::pair<unsigned long const, Chunk> >, std::less<unsigned long>, std::allocator<std::pair<unsigned long const, Chunk> > >::_M_erase_aux(std::_Rb_tree_const_iterator<std::pair<unsigned long const, Chunk> >)@Base" 1.0.14
> - (c++)"std::_Rb_tree<unsigned long, std::pair<unsigned long const, SamRecord*>, std::_Select1st<std::pair<unsigned long const, SamRecord*> >, std::less<unsigned long>, std::allocator<std::pair<unsigned long const, SamRecord*> > >::_M_erase(std::_Rb_tree_node<std::pair<unsigned long const, SamRecord*> >*)@Base" 1.0.14
> - (c++)"std::_Rb_tree_iterator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > std::_Rb_tree<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::_Identity<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::_M_insert_<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::_Rb_tree<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::_Identity<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::_Alloc_node>(std::_Rb_tree_node_base*, std::_Rb_tree_node_base*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::_Rb_tree<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::_Identity<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::_Alloc_node&)@Base" 1.0.14
> - (c++)"std::_Rb_tree_iterator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, NonOverlapRegionPos> > std::_Rb_tree<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, NonOverlapRegionPos>, std::_Select1st<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, NonOverlapRegionPos> >, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, NonOverlapRegionPos> > >::_M_emplace_hint_unique<std::piecewise_construct_t const&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<> >(std::_Rb_tree_const_iterator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, NonOverlapRegionPos> >, std::piecewise_construct_t const&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>&&, std::tuple<>&&)@Base" 1.0.14
> +#MISSING: 1.0.14-6# (c++)"std::_Rb_tree<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned int>, std::_Select1st<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned int> >, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned int> > >::_M_erase(std::_Rb_tree_node<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned int> >*)@Base" 1.0.14
> +#MISSING: 1.0.14-6# (c++)"std::_Rb_tree<unsigned long, std::pair<unsigned long const, Chunk>, std::_Select1st<std::pair<unsigned long const, Chunk> >, std::less<unsigned long>, std::allocator<std::pair<unsigned long const, Chunk> > >::_M_erase(std::_Rb_tree_node<std::pair<unsigned long const, Chunk> >*)@Base" 1.0.14
> +#MISSING: 1.0.14-6# (c++)"std::_Rb_tree<unsigned long, std::pair<unsigned long const, Chunk>, std::_Select1st<std::pair<unsigned long const, Chunk> >, std::less<unsigned long>, std::allocator<std::pair<unsigned long const, Chunk> > >::_M_erase_aux(std::_Rb_tree_const_iterator<std::pair<unsigned long const, Chunk> >)@Base" 1.0.14
> +#MISSING: 1.0.14-6# (c++)"std::_Rb_tree<unsigned long, std::pair<unsigned long const, SamRecord*>, std::_Select1st<std::pair<unsigned long const, SamRecord*> >, std::less<unsigned long>, std::allocator<std::pair<unsigned long const, SamRecord*> > >::_M_erase(std::_Rb_tree_node<std::pair<unsigned long const, SamRecord*> >*)@Base" 1.0.14
> +#MISSING: 1.0.14-6# (c++)"std::_Rb_tree_iterator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > std::_Rb_tree<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::_Identity<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::_M_insert_<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::_Rb_tree<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::_Identity<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::_Alloc_node>(std::_Rb_tree_node_base*, std::_Rb_tree_node_base*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::_Rb_tree<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::_Identity<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::_Alloc_node&)@Base" 1.0.14
> +#MISSING: 1.0.14-6# (c++)"std::_Rb_tree_iterator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, NonOverlapRegionPos> > std::_Rb_tree<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, NonOverlapRegionPos>, std::_Select1st<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, NonOverlapRegionPos> >, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, NonOverlapRegionPos> > >::_M_emplace_hint_unique<std::piecewise_construct_t const&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<> >(std::_Rb_tree_const_iterator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, NonOverlapRegionPos> >, std::piecewise_construct_t const&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>&&, std::tuple<>&&)@Base" 1.0.14
> (c++)"std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > std::operator+<char, std::char_traits<char>, std::allocator<char> >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, char const*)@Base" 1.0.14
> (c++)"std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >::~basic_stringbuf()@Base" 1.0.14
> - (c++)"std::__detail::_Hash_node<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, true>* std::__detail::_Hashtable_alloc<std::allocator<std::__detail::_Hash_node<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, true> > >::_M_allocate_node<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)@Base" 1.0.14
> +#MISSING: 1.0.14-6# (c++)"std::__detail::_Hash_node<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, true>* std::__detail::_Hashtable_alloc<std::allocator<std::__detail::_Hash_node<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, true> > >::_M_allocate_node<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)@Base" 1.0.14
> (c++)"std::ctype<char>::do_widen(char) const at Base" 1.0.14
> (c++)"std::pair<std::_Rb_tree_iterator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, bool> std::_Rb_tree<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::_Identity<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::_M_insert_unique<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)@Base" 1.0.14
> (c++)"std::pair<std::_Rb_tree_iterator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned int> >, bool> std::_Rb_tree<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned int>, std::_Select1st<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned int> >, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, unsigned int> > >::_M_emplace_unique<std::pair<char const*, unsigned int> >(std::pair<char const*, unsigned int>&&)@Base" 1.0.14
> (c++)"std::pair<std::_Rb_tree_iterator<std::pair<unsigned long const, Chunk> >, bool> std::_Rb_tree<unsigned long, std::pair<unsigned long const, Chunk>, std::_Select1st<std::pair<unsigned long const, Chunk> >, std::less<unsigned long>, std::allocator<std::pair<unsigned long const, Chunk> > >::_M_emplace_unique<std::pair<unsigned long, Chunk> >(std::pair<unsigned long, Chunk>&&)@Base" 1.0.14
> - (c++)"std::pair<std::__detail::_Node_iterator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, true, true>, bool> std::_Hashtable<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::__detail::_Identity, std::equal_to<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::hash<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, true, true> >::_M_insert<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__detail::_AllocNode<std::allocator<std::__detail::_Hash_node<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, true> > > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__detail::_AllocNode<std::allocator<std::__detail::_Hash_node<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, true> > > const&, std::integral_constant<bool, true>, unsigned long)@Base" 1.0.14
> +#MISSING: 1.0.14-6# (c++)"std::pair<std::__detail::_Node_iterator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, true, true>, bool> std::_Hashtable<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::__detail::_Identity, std::equal_to<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::hash<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash, std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true, true, true> >::_M_insert<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__detail::_AllocNode<std::allocator<std::__detail::_Hash_node<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, true> > > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__detail::_AllocNode<std::allocator<std::__detail::_Hash_node<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, true> > > const&, std::integral_constant<bool, true>, unsigned long)@Base" 1.0.14
> (c++)"std::set<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::~set()@Base" 1.0.14
> (c++)"std::vector<IndexBase::Bin, std::allocator<IndexBase::Bin> >::_M_default_append(unsigned long)@Base" 1.0.14
> - (c++)"std::vector<IndexBase::Bin, std::allocator<IndexBase::Bin> >::~vector()@Base" 1.0.14
> +#MISSING: 1.0.14-6# (c++)"std::vector<IndexBase::Bin, std::allocator<IndexBase::Bin> >::~vector()@Base" 1.0.14
> (c++)"std::vector<IndexBase::Reference, std::allocator<IndexBase::Reference> >::_M_default_append(unsigned long)@Base" 1.0.14
> (c++)"std::vector<IndexBase::Reference, std::allocator<IndexBase::Reference> >::~vector()@Base" 1.0.14
> (c++)"std::vector<String, std::allocator<String> >::_M_default_append(unsigned long)@Base" 1.0.14
> @@ -1749,7 +1766,7 @@
> (c++)"std::vector<VcfGenotypeSample*, std::allocator<VcfGenotypeSample*> >::_M_default_append(unsigned long)@Base" 1.0.14
> (c++)"std::vector<VcfRecordInfo::InfoElement*, std::allocator<VcfRecordInfo::InfoElement*> >::_M_default_append(unsigned long)@Base" 1.0.14
> (c++)"std::vector<bool, std::allocator<bool> >::_M_fill_insert(std::_Bit_iterator, unsigned long, bool)@Base" 1.0.14
> - (c++)"std::vector<bool, std::allocator<bool> >::_M_insert_aux(std::_Bit_iterator, bool)@Base" 1.0.14
> +#MISSING: 1.0.14-6# (c++)"std::vector<bool, std::allocator<bool> >::_M_insert_aux(std::_Bit_iterator, bool)@Base" 1.0.14
> (c++)"std::vector<char const*, std::allocator<char const*> >::_M_default_append(unsigned long)@Base" 1.0.14
> (c++)"std::vector<int, std::allocator<int> >::_M_default_append(unsigned long)@Base" 1.0.14
> (c++)"std::vector<int, std::allocator<int> >::_M_fill_insert(__gnu_cxx::__normal_iterator<int*, std::vector<int, std::allocator<int> > >, unsigned long, int const&)@Base" 1.0.14
> @@ -1896,24 +1913,24 @@
> (c++)"typeinfo name for VectorFunc at Base" 1.0.14
> (c++)"typeinfo name for std::_Vector_base<unsigned char, std::allocator<unsigned char> >@Base" 1.0.14
> (c++)"typeinfo name for std::vector<unsigned char, std::allocator<unsigned char> >@Base" 1.0.14
> - (c++)"void std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_construct<char const*>(char const*, char const*, std::forward_iterator_tag)@Base" 1.0.14
> - (c++)"void std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_construct<char*>(char*, char*, std::forward_iterator_tag)@Base" 1.0.14
> +#MISSING: 1.0.14-6# (c++)"void std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_construct<char const*>(char const*, char const*, std::forward_iterator_tag)@Base" 1.0.14
> +#MISSING: 1.0.14-6# (c++)"void std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_construct<char*>(char*, char*, std::forward_iterator_tag)@Base" 1.0.14
> (c++)"void std::vector<BaseCount, std::allocator<BaseCount> >::_M_realloc_insert<BaseCount const&>(__gnu_cxx::__normal_iterator<BaseCount*, std::vector<BaseCount, std::allocator<BaseCount> > >, BaseCount const&)@Base" 1.0.14
> (c++)"void std::vector<Cigar::CigarOperator, std::allocator<Cigar::CigarOperator> >::_M_realloc_insert<Cigar::CigarOperator const&>(__gnu_cxx::__normal_iterator<Cigar::CigarOperator*, std::vector<Cigar::CigarOperator, std::allocator<Cigar::CigarOperator> > >, Cigar::CigarOperator const&)@Base" 1.0.14
> (c++)"void std::vector<SamHeaderRecord*, std::allocator<SamHeaderRecord*> >::_M_realloc_insert<SamHeaderRecord*>(__gnu_cxx::__normal_iterator<SamHeaderRecord**, std::vector<SamHeaderRecord*, std::allocator<SamHeaderRecord*> > >, SamHeaderRecord*&&)@Base" 1.0.14
> - (c++)"void std::vector<SamHeaderRecord*, std::allocator<SamHeaderRecord*> >::emplace_back<SamHeaderRecord*>(SamHeaderRecord*&&)@Base" 1.0.14
> +#MISSING: 1.0.14-6# (c++)"void std::vector<SamHeaderRecord*, std::allocator<SamHeaderRecord*> >::emplace_back<SamHeaderRecord*>(SamHeaderRecord*&&)@Base" 1.0.14
> (c++)"void std::vector<SamHeaderTag*, std::allocator<SamHeaderTag*> >::_M_realloc_insert<SamHeaderTag* const&>(__gnu_cxx::__normal_iterator<SamHeaderTag**, std::vector<SamHeaderTag*, std::allocator<SamHeaderTag*> > >, SamHeaderTag* const&)@Base" 1.0.14
> (c++)"void std::vector<String, std::allocator<String> >::_M_realloc_insert<String const&>(__gnu_cxx::__normal_iterator<String*, std::vector<String, std::allocator<String> > >, String const&)@Base" 1.0.14
> (c++)"void std::vector<String, std::allocator<String> >::_M_realloc_insert<String>(__gnu_cxx::__normal_iterator<String*, std::vector<String, std::allocator<String> > >, String&&)@Base" 1.0.14
> - (c++)"void std::vector<String, std::allocator<String> >::emplace_back<String>(String&&)@Base" 1.0.14
> +#MISSING: 1.0.14-6# (c++)"void std::vector<String, std::allocator<String> >::emplace_back<String>(String&&)@Base" 1.0.14
> (c++)"void std::vector<char, std::allocator<char> >::_M_realloc_insert<char const&>(__gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > >, char const&)@Base" 1.0.14
> - (c++)"void std::vector<char, std::allocator<char> >::emplace_back<char>(char&&)@Base" 1.0.14
> +#MISSING: 1.0.14-6# (c++)"void std::vector<char, std::allocator<char> >::emplace_back<char>(char&&)@Base" 1.0.14
> (c++)"void std::vector<int, std::allocator<int> >::_M_realloc_insert<int const&>(__gnu_cxx::__normal_iterator<int*, std::vector<int, std::allocator<int> > >, int const&)@Base" 1.0.14
> - (c++)"void std::vector<int, std::allocator<int> >::emplace_back<int>(int&&)@Base" 1.0.14
> +#MISSING: 1.0.14-6# (c++)"void std::vector<int, std::allocator<int> >::emplace_back<int>(int&&)@Base" 1.0.14
> (c++)"void std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::_M_realloc_insert<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(__gnu_cxx::__normal_iterator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)@Base" 1.0.14
> (c++)"void std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::_M_realloc_insert<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&>(__gnu_cxx::__normal_iterator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)@Base" 1.0.14
> - (c++)"void std::vector<unsigned char, std::allocator<unsigned char> >::_M_range_insert<unsigned char*>(__gnu_cxx::__normal_iterator<unsigned char*, std::vector<unsigned char, std::allocator<unsigned char> > >, unsigned char*, unsigned char*, std::forward_iterator_tag)@Base" 1.0.14
> - (c++)"void std::vector<unsigned char, std::allocator<unsigned char> >::emplace_back<unsigned char>(unsigned char&&)@Base" 1.0.14
> +#MISSING: 1.0.14-6# (c++)"void std::vector<unsigned char, std::allocator<unsigned char> >::_M_range_insert<unsigned char*>(__gnu_cxx::__normal_iterator<unsigned char*, std::vector<unsigned char, std::allocator<unsigned char> > >, unsigned char*, unsigned char*, std::forward_iterator_tag)@Base" 1.0.14
> +#MISSING: 1.0.14-6# (c++)"void std::vector<unsigned char, std::allocator<unsigned char> >::emplace_back<unsigned char>(unsigned char&&)@Base" 1.0.14
> (c++)"vtable for BGZFReader at Base" 1.0.14
> (c++)"vtable for BamIndex at Base" 1.0.14
> (c++)"vtable for BamInterface at Base" 1.0.14
> dh_makeshlibs: error: failing due to earlier errors
> make: *** [debian/rules:11: binary] Error 25
The full build log is available from:
http://qa-logs.debian.net/2020/08/02/libstatgen_1.0.14-6_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
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