[Debian-med-packaging] Bug#974733: q2-quality-filter: unsatisfiable build-dependencies

[Étienne Mollier]

Hi Andreas,

On Thu, 3 Dec 2020 14:18:08 +0100 Andreas Tille <andreas at fam-tille.de> wrote:
> ======================================================================
> ERROR: test_q_score (q2_quality_filter.test.test_filter.FilterTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/tmp/autopkgtest.Oa4qOC/autopkgtest_tmp/q2_quality_filter/test/test_filter.py", line 108, in test_q_score
>     with redirected_stdio(stdout=os.devnull):
>   File "/usr/lib/python3.9/contextlib.py", line 117, in __enter__
>     return next(self.gen)
>   File "/usr/lib/python3/dist-packages/qiime2/util.py", line 24, in redirected_stdio
>     with _redirected_fd(to=stdout, stdio=sys.stdout):
>   File "/usr/lib/python3.9/contextlib.py", line 117, in __enter__
>     return next(self.gen)
>   File "/usr/lib/python3/dist-packages/qiime2/util.py", line 43, in _redirected_fd
>     stdio_fd = _get_fileno(stdio)
>   File "/usr/lib/python3/dist-packages/qiime2/util.py", line 64, in _get_fileno
>     fd = getattr(file_or_fd, 'fileno', lambda: file_or_fd)()
> io.UnsupportedOperation: fileno
> -------------------- >> begin captured logging << --------------------
> bibtexparser.bparser: DEBUG: Found Entry: ['Article', 'Bolyen2019', {'url': 'https://doi.org/10.1038/s41587-019-0209-9', 'doi': '10.1038/s41587-019-0209-9', 'issn': '1546-1696', 'pages': '852

The autopkgtest uses nosetests3, which does not cope with the
pytest-3 decorators.  Moving to py.test-3 solves this without
impeding the test coverage it seems.  I'll run a few tests to
make sure everything is okay, then I'll push to Salsa and, it
should be ready for upload.

Cheers,
-- 
Étienne Mollier <etienne.mollier at mailoo.org>
Fingerprint:  8f91 b227 c7d6 f2b1 948c  8236 793c f67e 8f0d 11da
Sent from /dev/pts/5, please excuse my verbosity.
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