[Debian-med-packaging] Bug#976524: bmtk: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.8 3.9" returned exit code 13

[Lucas Nussbaum]

Source: bmtk
Version: 0.0+git20201018.018da0a+ds-1
Severity: serious
Justification: FTBFS on arm64
Tags: bullseye sid ftbfs
Usertags: ftbfs-20201205 ftbfs-bullseye

Hi,

During a rebuild of all packages in sid, your package failed to build
on arm64 (I don't know if it also fails on amd64).

Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> dh_auto_build
> I: pybuild base:232: /usr/bin/python3.8 setup.py build 
> running build
> running build_py
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk
> copying bmtk/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils
> copying bmtk/utils/sim_setup.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils
> copying bmtk/utils/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils
> copying bmtk/utils/hdf5_helper.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils
> copying bmtk/utils/property_schema.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests
> copying bmtk/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/analyzer
> copying bmtk/analyzer/spikes_analyzer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/analyzer
> copying bmtk/analyzer/firing_rates.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/analyzer
> copying bmtk/analyzer/compartment.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/analyzer
> copying bmtk/analyzer/spikes_loader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/analyzer
> copying bmtk/analyzer/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/analyzer
> copying bmtk/analyzer/spike_trains.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/analyzer
> copying bmtk/analyzer/io_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/analyzer
> copying bmtk/analyzer/cell_vars.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/analyzer
> copying bmtk/analyzer/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/analyzer
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator
> copying bmtk/simulator/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/builder
> copying bmtk/builder/node.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/builder
> copying bmtk/builder/node_pool.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/builder
> copying bmtk/builder/node_set.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/builder
> copying bmtk/builder/functor_cache.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/builder
> copying bmtk/builder/id_generator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/builder
> copying bmtk/builder/connector.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/builder
> copying bmtk/builder/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/builder
> copying bmtk/builder/network.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/builder
> copying bmtk/builder/edge.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/builder
> copying bmtk/builder/connection_map.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/builder
> copying bmtk/builder/iterator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/builder
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/io
> copying bmtk/utils/io/firing_rates.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/io
> copying bmtk/utils/io/spike_trains.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/io
> copying bmtk/utils/io/cell_vars.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/io
> copying bmtk/utils/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/io
> copying bmtk/utils/io/ioutils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/io
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/node.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/file_root.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/file.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/types_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/edge.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/group.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/column_property.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/population.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/sonata
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/reports
> copying bmtk/utils/reports/current_writer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/reports
> copying bmtk/utils/reports/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/reports
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/converters
> copying bmtk/utils/converters/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/converters
> copying bmtk/utils/converters/hoc_converter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/converters
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/sonata/config
> copying bmtk/utils/sonata/config/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/sonata/config
> copying bmtk/utils/sonata/config/sonata_config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/sonata/config
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/reports/compartment
> copying bmtk/utils/reports/compartment/plotting.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/reports/compartment
> copying bmtk/utils/reports/compartment/core.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/reports/compartment
> copying bmtk/utils/reports/compartment/compartment_writer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/reports/compartment
> copying bmtk/utils/reports/compartment/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/reports/compartment
> copying bmtk/utils/reports/compartment/compartment_report.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/reports/compartment
> copying bmtk/utils/reports/compartment/compartment_reader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/reports/compartment
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/plotting.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/spike_trains_api.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/spike_train_buffer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/spike_trains.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/core.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/spike_train_readers.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/spikes_file_writers.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/stats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/reports/spike_trains
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/converters/sonata
> copying bmtk/utils/converters/sonata/node_converters.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/converters/sonata
> copying bmtk/utils/converters/sonata/edge_converters.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/converters/sonata
> copying bmtk/utils/converters/sonata/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/converters/sonata
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator
> copying bmtk/tests/simulator/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/bionet
> copying bmtk/tests/simulator/bionet/test_nrn.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/bionet
> copying bmtk/tests/simulator/bionet/set_cell_params.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/bionet
> copying bmtk/tests/simulator/bionet/set_syn_params.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/bionet
> copying bmtk/tests/simulator/bionet/test_biograph.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/bionet
> copying bmtk/tests/simulator/bionet/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/bionet
> copying bmtk/tests/simulator/bionet/test_gids.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/bionet
> copying bmtk/tests/simulator/bionet/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/bionet
> copying bmtk/tests/simulator/bionet/bionet_virtual_files.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/bionet
> copying bmtk/tests/simulator/bionet/set_weights.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/bionet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/popnet
> copying bmtk/tests/simulator/popnet/test_popgraph.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/popnet
> copying bmtk/tests/simulator/popnet/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/popnet
> copying bmtk/tests/simulator/popnet/popnet_virtual_files.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/popnet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/pointnet
> copying bmtk/tests/simulator/pointnet/pointnet_virtual_files.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/pointnet
> copying bmtk/tests/simulator/pointnet/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/pointnet
> copying bmtk/tests/simulator/pointnet/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/pointnet
> copying bmtk/tests/simulator/pointnet/test_pointgraph.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/pointnet
> copying bmtk/tests/simulator/pointnet/test_glif_utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/pointnet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/analyzer/visualization
> copying bmtk/analyzer/visualization/widgets.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/analyzer/visualization
> copying bmtk/analyzer/visualization/spikes.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/analyzer/visualization
> copying bmtk/analyzer/visualization/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/analyzer/visualization
> copying bmtk/analyzer/visualization/rasters.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/analyzer/visualization
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/filters.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/filternetwork.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/transfer_functions.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/filtersimulator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/cell.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/io_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/cell_models.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/sonata_adaptors.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/pyfunction_cache.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/iclamp.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/cell.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/io_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/nml_reader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/virtualcell.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/biocell.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/gids.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/pointprocesscell.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/sonata_adaptors.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/biosimulator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/seclamp.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/morphology.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/bionetwork.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/pyfunction_cache.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/nrn.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/pointsomacell.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/utils
> copying bmtk/simulator/utils/simulation_reports.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/utils
> copying bmtk/simulator/utils/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/utils
> copying bmtk/simulator/utils/graph.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/utils
> copying bmtk/simulator/utils/property_maps.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/utils
> copying bmtk/simulator/utils/simulation_inputs.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/utils
> copying bmtk/simulator/utils/config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/utils
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/core
> copying bmtk/simulator/core/simulator_network.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/core
> copying bmtk/simulator/core/simulation_config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/core
> copying bmtk/simulator/core/simulator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/core
> copying bmtk/simulator/core/edge_population.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/core
> copying bmtk/simulator/core/simulation_config_validator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/core
> copying bmtk/simulator/core/io_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/core
> copying bmtk/simulator/core/node_sets.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/core
> copying bmtk/simulator/core/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/core
> copying bmtk/simulator/core/graph.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/core
> copying bmtk/simulator/core/network_reader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/core
> copying bmtk/simulator/core/node_population.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/core
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/popsimulator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/popnetwork.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/popedge.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/popnetwork_OLD.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/sonata_adaptors.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/popnode.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/popnet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/io_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/property_map.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/pointsimulator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/gids.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/sonata_adaptors.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/glif_utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/pyfunction_cache.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/pointnetwork.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/pointnet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet/modules
> copying bmtk/simulator/filternet/modules/create_spikes.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet/modules
> copying bmtk/simulator/filternet/modules/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet/modules
> copying bmtk/simulator/filternet/modules/base.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet/modules
> copying bmtk/simulator/filternet/modules/record_rates.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet/modules
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet/default_setters
> copying bmtk/simulator/filternet/default_setters/cell_loaders.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet/default_setters
> copying bmtk/simulator/filternet/default_setters/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet/default_setters
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/spatialfilter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/lattice_unit_constructor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/util_fns.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/kernel.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/linearfilter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/temporalfilter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/fitfuns.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/poissongeneration.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/transferfunction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/cursor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/lnunit.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/singleunitcell.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/lgnmodel1.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/movie.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/cellmodel.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/cellmetrics.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/utilities.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/make_cell_list.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet/lgnmodel
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/record_clamp.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/save_synapses.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/ecp.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/sim_module.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/xstim_waveforms.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/xstim.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/record_netcons.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/record_cellvars.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/record_spikes.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet/modules
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet/default_setters
> copying bmtk/simulator/bionet/default_setters/synaptic_weights.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet/default_setters
> copying bmtk/simulator/bionet/default_setters/cell_models.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet/default_setters
> copying bmtk/simulator/bionet/default_setters/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet/default_setters
> copying bmtk/simulator/bionet/default_setters/synapse_models.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet/default_setters
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/utils/tools
> copying bmtk/simulator/utils/tools/process_spikes.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/utils/tools
> copying bmtk/simulator/utils/tools/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/utils/tools
> copying bmtk/simulator/utils/tools/spatial.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/utils/tools
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/core/sonata_reader
> copying bmtk/simulator/core/sonata_reader/node_adaptor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/core/sonata_reader
> copying bmtk/simulator/core/sonata_reader/edge_adaptor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/core/sonata_reader
> copying bmtk/simulator/core/sonata_reader/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/core/sonata_reader
> copying bmtk/simulator/core/sonata_reader/network_reader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/core/sonata_reader
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/popnet/property_schemas
> copying bmtk/simulator/popnet/property_schemas/base_schema.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/popnet/property_schemas
> copying bmtk/simulator/popnet/property_schemas/property_schema_ver1.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/popnet/property_schemas
> copying bmtk/simulator/popnet/property_schemas/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/popnet/property_schemas
> copying bmtk/simulator/popnet/property_schemas/property_schema_ver0.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/popnet/property_schemas
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/pointnet/modules
> copying bmtk/simulator/pointnet/modules/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/pointnet/modules
> copying bmtk/simulator/pointnet/modules/multimeter_reporter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/pointnet/modules
> copying bmtk/simulator/pointnet/modules/record_spikes.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/pointnet/modules
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/pointnet/default_setters
> copying bmtk/simulator/pointnet/default_setters/synaptic_weights.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/pointnet/default_setters
> copying bmtk/simulator/pointnet/default_setters/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/pointnet/default_setters
> copying bmtk/simulator/pointnet/default_setters/synapse_models.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/pointnet/default_setters
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/builder/bionet
> copying bmtk/builder/bionet/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/builder/bionet
> copying bmtk/builder/bionet/swc_reader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/builder/bionet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/builder/networks
> copying bmtk/builder/networks/dm_network.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/builder/networks
> copying bmtk/builder/networks/mpi_network.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/builder/networks
> copying bmtk/builder/networks/nxnetwork.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/builder/networks
> copying bmtk/builder/networks/sparse_network.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/builder/networks
> copying bmtk/builder/networks/input_network.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/builder/networks
> copying bmtk/builder/networks/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/builder/networks
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/builder/auxi
> copying bmtk/builder/auxi/edge_connectors.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/builder/auxi
> copying bmtk/builder/auxi/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/builder/auxi
> copying bmtk/builder/auxi/node_params.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/builder/auxi
> running egg_info
> creating bmtk.egg-info
> writing bmtk.egg-info/PKG-INFO
> writing dependency_links to bmtk.egg-info/dependency_links.txt
> writing requirements to bmtk.egg-info/requires.txt
> writing top-level names to bmtk.egg-info/top_level.txt
> writing manifest file 'bmtk.egg-info/SOURCES.txt'
> reading manifest file 'bmtk.egg-info/SOURCES.txt'
> reading manifest template 'MANIFEST.in'
> writing manifest file 'bmtk.egg-info/SOURCES.txt'
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/__pycache__
> copying bmtk/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/__pycache__
> copying bmtk/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/__pycache__
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts
> copying bmtk/utils/scripts/sonata.circuit_config.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts
> copying bmtk/utils/scripts/sonata.simulation_config.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet
> copying bmtk/utils/scripts/bionet/default_config.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet
> copying bmtk/utils/scripts/bionet/run_bionet.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> copying bmtk/utils/scripts/bionet/biophysical_neuron_models/318331342_fit.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> copying bmtk/utils/scripts/bionet/biophysical_neuron_models/472363762_fit.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> copying bmtk/utils/scripts/bionet/biophysical_neuron_models/472912177_fit.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> copying bmtk/utils/scripts/bionet/biophysical_neuron_models/473862421_fit.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> copying bmtk/utils/scripts/bionet/biophysical_neuron_models/473863035_fit.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> copying bmtk/utils/scripts/bionet/biophysical_neuron_models/473863510_fit.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> copying bmtk/utils/scripts/bionet/biophysical_neuron_models/485184849_fit.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/mechanisms
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/CaDynamics.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Ca_HVA.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Ca_LVA.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Ih.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Im.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Im_v2.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/K_P.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/K_T.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Kd.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Kv2like.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Kv3_1.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/NaTa.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/NaTs.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/NaV.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Nap.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/SK.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/vecevent.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/morphologies
> copying bmtk/utils/scripts/bionet/morphologies/Nr5a1_471087815_m.swc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/morphologies
> copying bmtk/utils/scripts/bionet/morphologies/Pvalb_469628681_m.swc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/morphologies
> copying bmtk/utils/scripts/bionet/morphologies/Pvalb_470522102_m.swc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/morphologies
> copying bmtk/utils/scripts/bionet/morphologies/Rorb_325404214_m.swc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/morphologies
> copying bmtk/utils/scripts/bionet/morphologies/Scnn1a_473845048_m.swc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/morphologies
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/point_neuron_models
> copying bmtk/utils/scripts/bionet/point_neuron_models/IntFire1_exc_1.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/point_neuron_models
> copying bmtk/utils/scripts/bionet/point_neuron_models/IntFire1_inh_1.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/point_neuron_models
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/synaptic_models
> copying bmtk/utils/scripts/bionet/synaptic_models/AMPA_ExcToExc.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/synaptic_models
> copying bmtk/utils/scripts/bionet/synaptic_models/AMPA_ExcToInh.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/synaptic_models
> copying bmtk/utils/scripts/bionet/synaptic_models/GABA_InhToExc.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/synaptic_models
> copying bmtk/utils/scripts/bionet/synaptic_models/GABA_InhToInh.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/synaptic_models
> copying bmtk/utils/scripts/bionet/synaptic_models/instanteneousExc.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/synaptic_models
> copying bmtk/utils/scripts/bionet/synaptic_models/instanteneousInh.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/synaptic_models
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/templates
> copying bmtk/utils/scripts/bionet/templates/BioAllen_old.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/templates
> copying bmtk/utils/scripts/bionet/templates/BioAxonStub.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/templates
> copying bmtk/utils/scripts/bionet/templates/Biophys1.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/bionet/templates
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/filternet
> copying bmtk/utils/scripts/filternet/run_filternet.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/filternet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF1.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF15.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF2.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF4.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF8.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sON_TF1.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sON_TF2.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sON_TF4.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sON_TF8.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/tOFF_TF15.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/tOFF_TF4.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/tOFF_TF8.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/filternet/filter_models
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/pointnet
> copying bmtk/utils/scripts/pointnet/run_pointnet.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/pointnet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/472363762_point.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/472912177_point.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/473862421_point.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/473863035_point.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/473863510_point.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/IntFire1_exc_point.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/IntFire1_inh_point.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/filter_point.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/pointnet/point_neuron_models
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/pointnet/synaptic_models
> copying bmtk/utils/scripts/pointnet/synaptic_models/ExcToExc.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/pointnet/synaptic_models
> copying bmtk/utils/scripts/pointnet/synaptic_models/ExcToInh.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/pointnet/synaptic_models
> copying bmtk/utils/scripts/pointnet/synaptic_models/InhToExc.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/pointnet/synaptic_models
> copying bmtk/utils/scripts/pointnet/synaptic_models/InhToInh.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/pointnet/synaptic_models
> copying bmtk/utils/scripts/pointnet/synaptic_models/instanteneousExc.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/pointnet/synaptic_models
> copying bmtk/utils/scripts/pointnet/synaptic_models/instanteneousInh.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/pointnet/synaptic_models
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/popnet
> copying bmtk/utils/scripts/popnet/run_popnet.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/popnet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/popnet/population_models
> copying bmtk/utils/scripts/popnet/population_models/exc_model.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/popnet/population_models
> copying bmtk/utils/scripts/popnet/population_models/inh_model.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/popnet/population_models
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/popnet/synaptic_models
> copying bmtk/utils/scripts/popnet/synaptic_models/ExcToExc.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/popnet/synaptic_models
> copying bmtk/utils/scripts/popnet/synaptic_models/ExcToInh.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/popnet/synaptic_models
> copying bmtk/utils/scripts/popnet/synaptic_models/InhToExc.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/popnet/synaptic_models
> copying bmtk/utils/scripts/popnet/synaptic_models/InhToInh.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/popnet/synaptic_models
> copying bmtk/utils/scripts/popnet/synaptic_models/input_ExcToExc.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/popnet/synaptic_models
> copying bmtk/utils/scripts/popnet/synaptic_models/input_ExcToInh.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/scripts/popnet/synaptic_models
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/builder
> copying bmtk/tests/builder/test_connection_map.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/builder
> copying bmtk/tests/builder/test_connector.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/builder
> copying bmtk/tests/builder/test_densenetwork.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/builder
> copying bmtk/tests/builder/test_edge_iterator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/builder
> copying bmtk/tests/builder/test_id_generator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/builder
> copying bmtk/tests/builder/test_iterator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/builder
> copying bmtk/tests/builder/test_network.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/builder
> copying bmtk/tests/builder/test_node_pool.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/builder
> copying bmtk/tests/builder/test_node_set.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/builder
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/builder/auxi
> copying bmtk/tests/builder/auxi/test_edge_connectors.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/builder/auxi
> copying bmtk/tests/builder/auxi/test_node_params.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/builder/auxi
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/builder/bionet
> copying bmtk/tests/builder/bionet/test_swc_reader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/builder/bionet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/utils
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/utils/reports
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/utils/reports/compartment
> copying bmtk/tests/utils/reports/compartment/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/utils/reports/compartment
> copying bmtk/tests/utils/reports/compartment/test_compartment_reader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/utils/reports/compartment
> copying bmtk/tests/utils/reports/compartment/test_compartment_report.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/utils/reports/compartment
> copying bmtk/tests/utils/reports/compartment/test_compartment_writer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/utils/reports/compartment
> copying bmtk/tests/utils/reports/compartment/test_plotting.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/utils/reports/compartment
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/utils/reports/compartment/compartment_files
> copying bmtk/tests/utils/reports/compartment/compartment_files/multi_population_report.h5 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/utils/reports/compartment/compartment_files
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/utils/reports/spike_trains
> copying bmtk/tests/utils/reports/spike_trains/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/utils/reports/spike_trains
> copying bmtk/tests/utils/reports/spike_trains/benchmark_spikes_buffers.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/utils/reports/spike_trains
> copying bmtk/tests/utils/reports/spike_trains/test_csv_adaptor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/utils/reports/spike_trains
> copying bmtk/tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/utils/reports/spike_trains
> copying bmtk/tests/utils/reports/spike_trains/test_plotting.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/utils/reports/spike_trains
> copying bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/utils/reports/spike_trains
> copying bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/utils/reports/spike_trains
> copying bmtk/tests/utils/reports/spike_trains/test_spikes_buffer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/utils/reports/spike_trains
> copying bmtk/tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/utils/reports/spike_trains
> copying bmtk/tests/utils/reports/spike_trains/test_spikes_core.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/utils/reports/spike_trains
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/utils/sonata
> copying bmtk/tests/utils/sonata/test_config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/utils/sonata
> copying bmtk/tests/utils/sonata/test_config_validator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/utils/sonata
> copying bmtk/simulator/bionet/import3d.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet
> copying bmtk/utils/sonata/config/config_schema.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/sonata/config
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/core
> copying bmtk/tests/simulator/core/test_io_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/core
> copying bmtk/tests/simulator/core/test_simulation_config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/core
> copying bmtk/tests/simulator/core/test_simulation_config_validator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/core
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/filternet
> copying bmtk/tests/simulator/filternet/test_default_setters.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/filternet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/filternet/lgnmodel
> copying bmtk/tests/simulator/filternet/lgnmodel/test_kernels.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/filternet/lgnmodel
> copying bmtk/tests/simulator/filternet/lgnmodel/test_movie.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/filternet/lgnmodel
> copying bmtk/tests/simulator/filternet/lgnmodel/test_subclass_metrics.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/filternet/lgnmodel
> copying bmtk/tests/simulator/filternet/lgnmodel/test_transferfunction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/filternet/lgnmodel
> copying bmtk/tests/simulator/filternet/lgnmodel/test_units.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/filternet/lgnmodel
> copying bmtk/tests/simulator/filternet/lgnmodel/test_utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/filternet/lgnmodel
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/utils
> copying bmtk/tests/simulator/utils/test_simulation_inputs.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/utils
> copying bmtk/tests/simulator/utils/test_simulation_reports.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/utils
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/pointnet/glif_models
> copying bmtk/tests/simulator/pointnet/glif_models/637930677_lif.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/pointnet/glif_models
> copying bmtk/tests/simulator/pointnet/glif_models/637930677_lif_asc.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/pointnet/glif_models
> copying bmtk/tests/simulator/pointnet/glif_models/637930677_lif_r.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/pointnet/glif_models
> copying bmtk/tests/simulator/pointnet/glif_models/637930677_lif_r_asc.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/pointnet/glif_models
> copying bmtk/tests/simulator/pointnet/glif_models/637930677_lif_r_asc_a.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/tests/simulator/pointnet/glif_models
> copying bmtk/simulator/bionet/README.md -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet/default_templates
> copying bmtk/simulator/bionet/default_templates/BioAxonStub.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet/default_templates
> copying bmtk/simulator/bionet/default_templates/Biophys1.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet/default_templates
> copying bmtk/simulator/bionet/default_templates/advance.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet/default_templates
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet/import3d
> copying bmtk/simulator/bionet/import3d/import3d_gui.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet/import3d
> copying bmtk/simulator/bionet/import3d/import3d_sec.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet/import3d
> copying bmtk/simulator/bionet/import3d/read_morphml.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet/import3d
> copying bmtk/simulator/bionet/import3d/read_nlcda.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet/import3d
> copying bmtk/simulator/bionet/import3d/read_nlcda3.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet/import3d
> copying bmtk/simulator/bionet/import3d/read_nts.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet/import3d
> copying bmtk/simulator/bionet/import3d/read_swc.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet/import3d
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet/schemas
> copying bmtk/simulator/bionet/schemas/config_schema.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet/schemas
> copying bmtk/simulator/bionet/schemas/csv_edge_types.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet/schemas
> copying bmtk/simulator/bionet/schemas/csv_node_types_external.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet/schemas
> copying bmtk/simulator/bionet/schemas/csv_node_types_internal.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet/schemas
> copying bmtk/simulator/bionet/schemas/csv_nodes_external.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet/schemas
> copying bmtk/simulator/bionet/schemas/csv_nodes_internal.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/bionet/schemas
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/utils/scripts
> copying bmtk/simulator/utils/scripts/convert_filters.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/utils/scripts
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/core/sonata_schemas
> copying bmtk/simulator/core/sonata_schemas/config_schema.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/core/sonata_schemas
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
> copying bmtk/simulator/filternet/lgnmodel/cell_metrics/sOFF_cell_data.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
> copying bmtk/simulator/filternet/lgnmodel/cell_metrics/sON_cell_data.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
> copying bmtk/simulator/filternet/lgnmodel/cell_metrics/sus_sus_cells_v3.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
> copying bmtk/simulator/filternet/lgnmodel/cell_metrics/tOFF_cell_data.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
> copying bmtk/simulator/filternet/lgnmodel/cell_metrics/tON_cell_data.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
> copying bmtk/simulator/filternet/lgnmodel/cell_metrics/trans_sus_cells_v3.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
> I: pybuild base:232: /usr/bin/python3 setup.py build 
> running build
> running build_py
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk
> copying bmtk/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils
> copying bmtk/utils/sim_setup.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils
> copying bmtk/utils/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils
> copying bmtk/utils/hdf5_helper.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils
> copying bmtk/utils/property_schema.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests
> copying bmtk/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/analyzer
> copying bmtk/analyzer/spikes_analyzer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/analyzer
> copying bmtk/analyzer/firing_rates.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/analyzer
> copying bmtk/analyzer/compartment.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/analyzer
> copying bmtk/analyzer/spikes_loader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/analyzer
> copying bmtk/analyzer/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/analyzer
> copying bmtk/analyzer/spike_trains.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/analyzer
> copying bmtk/analyzer/io_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/analyzer
> copying bmtk/analyzer/cell_vars.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/analyzer
> copying bmtk/analyzer/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/analyzer
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator
> copying bmtk/simulator/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder
> copying bmtk/builder/node.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder
> copying bmtk/builder/node_pool.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder
> copying bmtk/builder/node_set.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder
> copying bmtk/builder/functor_cache.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder
> copying bmtk/builder/id_generator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder
> copying bmtk/builder/connector.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder
> copying bmtk/builder/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder
> copying bmtk/builder/network.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder
> copying bmtk/builder/edge.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder
> copying bmtk/builder/connection_map.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder
> copying bmtk/builder/iterator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/io
> copying bmtk/utils/io/firing_rates.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/io
> copying bmtk/utils/io/spike_trains.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/io
> copying bmtk/utils/io/cell_vars.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/io
> copying bmtk/utils/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/io
> copying bmtk/utils/io/ioutils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/io
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/node.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/file_root.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/file.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/types_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/edge.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/group.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/column_property.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/sonata
> copying bmtk/utils/sonata/population.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/sonata
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports
> copying bmtk/utils/reports/current_writer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports
> copying bmtk/utils/reports/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/converters
> copying bmtk/utils/converters/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/converters
> copying bmtk/utils/converters/hoc_converter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/converters
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/sonata/config
> copying bmtk/utils/sonata/config/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/sonata/config
> copying bmtk/utils/sonata/config/sonata_config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/sonata/config
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/compartment
> copying bmtk/utils/reports/compartment/plotting.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/compartment
> copying bmtk/utils/reports/compartment/core.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/compartment
> copying bmtk/utils/reports/compartment/compartment_writer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/compartment
> copying bmtk/utils/reports/compartment/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/compartment
> copying bmtk/utils/reports/compartment/compartment_report.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/compartment
> copying bmtk/utils/reports/compartment/compartment_reader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/compartment
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/plotting.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/spike_trains_api.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/spike_train_buffer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/spike_trains.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/core.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/spike_train_readers.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/spikes_file_writers.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/spike_trains
> copying bmtk/utils/reports/spike_trains/stats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/spike_trains
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/converters/sonata
> copying bmtk/utils/converters/sonata/node_converters.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/converters/sonata
> copying bmtk/utils/converters/sonata/edge_converters.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/converters/sonata
> copying bmtk/utils/converters/sonata/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/converters/sonata
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator
> copying bmtk/tests/simulator/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/bionet
> copying bmtk/tests/simulator/bionet/test_nrn.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/bionet
> copying bmtk/tests/simulator/bionet/set_cell_params.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/bionet
> copying bmtk/tests/simulator/bionet/set_syn_params.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/bionet
> copying bmtk/tests/simulator/bionet/test_biograph.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/bionet
> copying bmtk/tests/simulator/bionet/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/bionet
> copying bmtk/tests/simulator/bionet/test_gids.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/bionet
> copying bmtk/tests/simulator/bionet/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/bionet
> copying bmtk/tests/simulator/bionet/bionet_virtual_files.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/bionet
> copying bmtk/tests/simulator/bionet/set_weights.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/bionet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/popnet
> copying bmtk/tests/simulator/popnet/test_popgraph.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/popnet
> copying bmtk/tests/simulator/popnet/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/popnet
> copying bmtk/tests/simulator/popnet/popnet_virtual_files.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/popnet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/pointnet
> copying bmtk/tests/simulator/pointnet/pointnet_virtual_files.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/pointnet
> copying bmtk/tests/simulator/pointnet/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/pointnet
> copying bmtk/tests/simulator/pointnet/conftest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/pointnet
> copying bmtk/tests/simulator/pointnet/test_pointgraph.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/pointnet
> copying bmtk/tests/simulator/pointnet/test_glif_utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/pointnet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/analyzer/visualization
> copying bmtk/analyzer/visualization/widgets.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/analyzer/visualization
> copying bmtk/analyzer/visualization/spikes.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/analyzer/visualization
> copying bmtk/analyzer/visualization/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/analyzer/visualization
> copying bmtk/analyzer/visualization/rasters.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/analyzer/visualization
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/filters.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/filternetwork.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/transfer_functions.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/filtersimulator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/cell.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/io_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/cell_models.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/sonata_adaptors.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet
> copying bmtk/simulator/filternet/pyfunction_cache.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/iclamp.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/cell.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/io_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/nml_reader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/virtualcell.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/biocell.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/gids.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/pointprocesscell.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/sonata_adaptors.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/biosimulator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/seclamp.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/morphology.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/bionetwork.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/pyfunction_cache.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/nrn.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/simulator/bionet/pointsomacell.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/utils
> copying bmtk/simulator/utils/simulation_reports.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/utils
> copying bmtk/simulator/utils/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/utils
> copying bmtk/simulator/utils/graph.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/utils
> copying bmtk/simulator/utils/property_maps.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/utils
> copying bmtk/simulator/utils/simulation_inputs.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/utils
> copying bmtk/simulator/utils/config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/utils
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core
> copying bmtk/simulator/core/simulator_network.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core
> copying bmtk/simulator/core/simulation_config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core
> copying bmtk/simulator/core/simulator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core
> copying bmtk/simulator/core/edge_population.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core
> copying bmtk/simulator/core/simulation_config_validator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core
> copying bmtk/simulator/core/io_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core
> copying bmtk/simulator/core/node_sets.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core
> copying bmtk/simulator/core/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core
> copying bmtk/simulator/core/graph.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core
> copying bmtk/simulator/core/network_reader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core
> copying bmtk/simulator/core/node_population.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/popsimulator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/popnetwork.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/popedge.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/popnetwork_OLD.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/sonata_adaptors.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/popnode.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/popnet
> copying bmtk/simulator/popnet/config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/popnet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/io_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/property_map.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/pointsimulator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/gids.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/sonata_adaptors.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/glif_utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/pyfunction_cache.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet
> copying bmtk/simulator/pointnet/pointnetwork.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/modules
> copying bmtk/simulator/filternet/modules/create_spikes.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/modules
> copying bmtk/simulator/filternet/modules/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/modules
> copying bmtk/simulator/filternet/modules/base.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/modules
> copying bmtk/simulator/filternet/modules/record_rates.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/modules
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/default_setters
> copying bmtk/simulator/filternet/default_setters/cell_loaders.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/default_setters
> copying bmtk/simulator/filternet/default_setters/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/default_setters
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/spatialfilter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/lattice_unit_constructor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/util_fns.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/kernel.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/linearfilter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/temporalfilter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/fitfuns.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/poissongeneration.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/transferfunction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/cursor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/lnunit.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/singleunitcell.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/lgnmodel1.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/movie.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/cellmodel.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/cellmetrics.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/utilities.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> copying bmtk/simulator/filternet/lgnmodel/make_cell_list.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/record_clamp.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/save_synapses.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/ecp.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/sim_module.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/xstim_waveforms.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/xstim.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/record_netcons.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/record_cellvars.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/modules
> copying bmtk/simulator/bionet/modules/record_spikes.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/modules
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/default_setters
> copying bmtk/simulator/bionet/default_setters/synaptic_weights.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/default_setters
> copying bmtk/simulator/bionet/default_setters/cell_models.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/default_setters
> copying bmtk/simulator/bionet/default_setters/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/default_setters
> copying bmtk/simulator/bionet/default_setters/synapse_models.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/default_setters
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/utils/tools
> copying bmtk/simulator/utils/tools/process_spikes.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/utils/tools
> copying bmtk/simulator/utils/tools/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/utils/tools
> copying bmtk/simulator/utils/tools/spatial.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/utils/tools
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core/sonata_reader
> copying bmtk/simulator/core/sonata_reader/node_adaptor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core/sonata_reader
> copying bmtk/simulator/core/sonata_reader/edge_adaptor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core/sonata_reader
> copying bmtk/simulator/core/sonata_reader/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core/sonata_reader
> copying bmtk/simulator/core/sonata_reader/network_reader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core/sonata_reader
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/popnet/property_schemas
> copying bmtk/simulator/popnet/property_schemas/base_schema.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/popnet/property_schemas
> copying bmtk/simulator/popnet/property_schemas/property_schema_ver1.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/popnet/property_schemas
> copying bmtk/simulator/popnet/property_schemas/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/popnet/property_schemas
> copying bmtk/simulator/popnet/property_schemas/property_schema_ver0.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/popnet/property_schemas
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet/modules
> copying bmtk/simulator/pointnet/modules/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet/modules
> copying bmtk/simulator/pointnet/modules/multimeter_reporter.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet/modules
> copying bmtk/simulator/pointnet/modules/record_spikes.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet/modules
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet/default_setters
> copying bmtk/simulator/pointnet/default_setters/synaptic_weights.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet/default_setters
> copying bmtk/simulator/pointnet/default_setters/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet/default_setters
> copying bmtk/simulator/pointnet/default_setters/synapse_models.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/pointnet/default_setters
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder/bionet
> copying bmtk/builder/bionet/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder/bionet
> copying bmtk/builder/bionet/swc_reader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder/bionet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder/networks
> copying bmtk/builder/networks/dm_network.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder/networks
> copying bmtk/builder/networks/mpi_network.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder/networks
> copying bmtk/builder/networks/nxnetwork.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder/networks
> copying bmtk/builder/networks/sparse_network.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder/networks
> copying bmtk/builder/networks/input_network.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder/networks
> copying bmtk/builder/networks/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder/networks
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder/auxi
> copying bmtk/builder/auxi/edge_connectors.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder/auxi
> copying bmtk/builder/auxi/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder/auxi
> copying bmtk/builder/auxi/node_params.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/builder/auxi
> running egg_info
> writing bmtk.egg-info/PKG-INFO
> writing dependency_links to bmtk.egg-info/dependency_links.txt
> writing requirements to bmtk.egg-info/requires.txt
> writing top-level names to bmtk.egg-info/top_level.txt
> reading manifest file 'bmtk.egg-info/SOURCES.txt'
> reading manifest template 'MANIFEST.in'
> writing manifest file 'bmtk.egg-info/SOURCES.txt'
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/__pycache__
> copying bmtk/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/__pycache__
> copying bmtk/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/__pycache__
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts
> copying bmtk/utils/scripts/sonata.circuit_config.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts
> copying bmtk/utils/scripts/sonata.simulation_config.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet
> copying bmtk/utils/scripts/bionet/default_config.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet
> copying bmtk/utils/scripts/bionet/run_bionet.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> copying bmtk/utils/scripts/bionet/biophysical_neuron_models/318331342_fit.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> copying bmtk/utils/scripts/bionet/biophysical_neuron_models/472363762_fit.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> copying bmtk/utils/scripts/bionet/biophysical_neuron_models/472912177_fit.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> copying bmtk/utils/scripts/bionet/biophysical_neuron_models/473862421_fit.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> copying bmtk/utils/scripts/bionet/biophysical_neuron_models/473863035_fit.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> copying bmtk/utils/scripts/bionet/biophysical_neuron_models/473863510_fit.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> copying bmtk/utils/scripts/bionet/biophysical_neuron_models/485184849_fit.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/CaDynamics.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Ca_HVA.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Ca_LVA.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Ih.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Im.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Im_v2.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/K_P.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/K_T.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Kd.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Kv2like.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Kv3_1.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/NaTa.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/NaTs.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/NaV.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Nap.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/SK.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> copying bmtk/utils/scripts/bionet/mechanisms/modfiles/vecevent.mod -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/morphologies
> copying bmtk/utils/scripts/bionet/morphologies/Nr5a1_471087815_m.swc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/morphologies
> copying bmtk/utils/scripts/bionet/morphologies/Pvalb_469628681_m.swc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/morphologies
> copying bmtk/utils/scripts/bionet/morphologies/Pvalb_470522102_m.swc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/morphologies
> copying bmtk/utils/scripts/bionet/morphologies/Rorb_325404214_m.swc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/morphologies
> copying bmtk/utils/scripts/bionet/morphologies/Scnn1a_473845048_m.swc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/morphologies
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/point_neuron_models
> copying bmtk/utils/scripts/bionet/point_neuron_models/IntFire1_exc_1.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/point_neuron_models
> copying bmtk/utils/scripts/bionet/point_neuron_models/IntFire1_inh_1.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/point_neuron_models
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/synaptic_models
> copying bmtk/utils/scripts/bionet/synaptic_models/AMPA_ExcToExc.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/synaptic_models
> copying bmtk/utils/scripts/bionet/synaptic_models/AMPA_ExcToInh.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/synaptic_models
> copying bmtk/utils/scripts/bionet/synaptic_models/GABA_InhToExc.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/synaptic_models
> copying bmtk/utils/scripts/bionet/synaptic_models/GABA_InhToInh.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/synaptic_models
> copying bmtk/utils/scripts/bionet/synaptic_models/instanteneousExc.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/synaptic_models
> copying bmtk/utils/scripts/bionet/synaptic_models/instanteneousInh.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/synaptic_models
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/templates
> copying bmtk/utils/scripts/bionet/templates/BioAllen_old.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/templates
> copying bmtk/utils/scripts/bionet/templates/BioAxonStub.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/templates
> copying bmtk/utils/scripts/bionet/templates/Biophys1.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/bionet/templates
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/filternet
> copying bmtk/utils/scripts/filternet/run_filternet.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/filternet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF1.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF15.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF2.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF4.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF8.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sON_TF1.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sON_TF2.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sON_TF4.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/sON_TF8.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/tOFF_TF15.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/tOFF_TF4.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/filternet/filter_models
> copying bmtk/utils/scripts/filternet/filter_models/tOFF_TF8.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/filternet/filter_models
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/pointnet
> copying bmtk/utils/scripts/pointnet/run_pointnet.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/pointnet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/472363762_point.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/472912177_point.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/473862421_point.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/473863035_point.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/473863510_point.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/IntFire1_exc_point.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/IntFire1_inh_point.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/pointnet/point_neuron_models
> copying bmtk/utils/scripts/pointnet/point_neuron_models/filter_point.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/pointnet/point_neuron_models
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/pointnet/synaptic_models
> copying bmtk/utils/scripts/pointnet/synaptic_models/ExcToExc.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/pointnet/synaptic_models
> copying bmtk/utils/scripts/pointnet/synaptic_models/ExcToInh.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/pointnet/synaptic_models
> copying bmtk/utils/scripts/pointnet/synaptic_models/InhToExc.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/pointnet/synaptic_models
> copying bmtk/utils/scripts/pointnet/synaptic_models/InhToInh.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/pointnet/synaptic_models
> copying bmtk/utils/scripts/pointnet/synaptic_models/instanteneousExc.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/pointnet/synaptic_models
> copying bmtk/utils/scripts/pointnet/synaptic_models/instanteneousInh.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/pointnet/synaptic_models
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/popnet
> copying bmtk/utils/scripts/popnet/run_popnet.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/popnet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/popnet/population_models
> copying bmtk/utils/scripts/popnet/population_models/exc_model.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/popnet/population_models
> copying bmtk/utils/scripts/popnet/population_models/inh_model.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/popnet/population_models
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/popnet/synaptic_models
> copying bmtk/utils/scripts/popnet/synaptic_models/ExcToExc.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/popnet/synaptic_models
> copying bmtk/utils/scripts/popnet/synaptic_models/ExcToInh.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/popnet/synaptic_models
> copying bmtk/utils/scripts/popnet/synaptic_models/InhToExc.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/popnet/synaptic_models
> copying bmtk/utils/scripts/popnet/synaptic_models/InhToInh.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/popnet/synaptic_models
> copying bmtk/utils/scripts/popnet/synaptic_models/input_ExcToExc.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/popnet/synaptic_models
> copying bmtk/utils/scripts/popnet/synaptic_models/input_ExcToInh.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/scripts/popnet/synaptic_models
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/builder
> copying bmtk/tests/builder/test_connection_map.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/builder
> copying bmtk/tests/builder/test_connector.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/builder
> copying bmtk/tests/builder/test_densenetwork.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/builder
> copying bmtk/tests/builder/test_edge_iterator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/builder
> copying bmtk/tests/builder/test_id_generator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/builder
> copying bmtk/tests/builder/test_iterator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/builder
> copying bmtk/tests/builder/test_network.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/builder
> copying bmtk/tests/builder/test_node_pool.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/builder
> copying bmtk/tests/builder/test_node_set.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/builder
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/builder/auxi
> copying bmtk/tests/builder/auxi/test_edge_connectors.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/builder/auxi
> copying bmtk/tests/builder/auxi/test_node_params.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/builder/auxi
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/builder/bionet
> copying bmtk/tests/builder/bionet/test_swc_reader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/builder/bionet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/compartment
> copying bmtk/tests/utils/reports/compartment/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/compartment
> copying bmtk/tests/utils/reports/compartment/test_compartment_reader.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/compartment
> copying bmtk/tests/utils/reports/compartment/test_compartment_report.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/compartment
> copying bmtk/tests/utils/reports/compartment/test_compartment_writer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/compartment
> copying bmtk/tests/utils/reports/compartment/test_plotting.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/compartment
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/compartment/compartment_files
> copying bmtk/tests/utils/reports/compartment/compartment_files/multi_population_report.h5 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/compartment/compartment_files
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains
> copying bmtk/tests/utils/reports/spike_trains/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains
> copying bmtk/tests/utils/reports/spike_trains/benchmark_spikes_buffers.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains
> copying bmtk/tests/utils/reports/spike_trains/test_csv_adaptor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains
> copying bmtk/tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains
> copying bmtk/tests/utils/reports/spike_trains/test_plotting.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains
> copying bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains
> copying bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains
> copying bmtk/tests/utils/reports/spike_trains/test_spikes_buffer.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains
> copying bmtk/tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains
> copying bmtk/tests/utils/reports/spike_trains/test_spikes_core.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/sonata
> copying bmtk/tests/utils/sonata/test_config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/sonata
> copying bmtk/tests/utils/sonata/test_config_validator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/utils/sonata
> copying bmtk/simulator/bionet/import3d.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> copying bmtk/utils/sonata/config/config_schema.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/sonata/config
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/core
> copying bmtk/tests/simulator/core/test_io_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/core
> copying bmtk/tests/simulator/core/test_simulation_config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/core
> copying bmtk/tests/simulator/core/test_simulation_config_validator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/core
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/filternet
> copying bmtk/tests/simulator/filternet/test_default_setters.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/filternet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/filternet/lgnmodel
> copying bmtk/tests/simulator/filternet/lgnmodel/test_kernels.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/filternet/lgnmodel
> copying bmtk/tests/simulator/filternet/lgnmodel/test_movie.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/filternet/lgnmodel
> copying bmtk/tests/simulator/filternet/lgnmodel/test_subclass_metrics.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/filternet/lgnmodel
> copying bmtk/tests/simulator/filternet/lgnmodel/test_transferfunction.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/filternet/lgnmodel
> copying bmtk/tests/simulator/filternet/lgnmodel/test_units.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/filternet/lgnmodel
> copying bmtk/tests/simulator/filternet/lgnmodel/test_utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/filternet/lgnmodel
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/utils
> copying bmtk/tests/simulator/utils/test_simulation_inputs.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/utils
> copying bmtk/tests/simulator/utils/test_simulation_reports.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/utils
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/pointnet/glif_models
> copying bmtk/tests/simulator/pointnet/glif_models/637930677_lif.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/pointnet/glif_models
> copying bmtk/tests/simulator/pointnet/glif_models/637930677_lif_asc.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/pointnet/glif_models
> copying bmtk/tests/simulator/pointnet/glif_models/637930677_lif_r.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/pointnet/glif_models
> copying bmtk/tests/simulator/pointnet/glif_models/637930677_lif_r_asc.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/pointnet/glif_models
> copying bmtk/tests/simulator/pointnet/glif_models/637930677_lif_r_asc_a.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/tests/simulator/pointnet/glif_models
> copying bmtk/simulator/bionet/README.md -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/default_templates
> copying bmtk/simulator/bionet/default_templates/BioAxonStub.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/default_templates
> copying bmtk/simulator/bionet/default_templates/Biophys1.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/default_templates
> copying bmtk/simulator/bionet/default_templates/advance.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/default_templates
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/import3d
> copying bmtk/simulator/bionet/import3d/import3d_gui.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/import3d
> copying bmtk/simulator/bionet/import3d/import3d_sec.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/import3d
> copying bmtk/simulator/bionet/import3d/read_morphml.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/import3d
> copying bmtk/simulator/bionet/import3d/read_nlcda.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/import3d
> copying bmtk/simulator/bionet/import3d/read_nlcda3.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/import3d
> copying bmtk/simulator/bionet/import3d/read_nts.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/import3d
> copying bmtk/simulator/bionet/import3d/read_swc.hoc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/import3d
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/schemas
> copying bmtk/simulator/bionet/schemas/config_schema.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/schemas
> copying bmtk/simulator/bionet/schemas/csv_edge_types.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/schemas
> copying bmtk/simulator/bionet/schemas/csv_node_types_external.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/schemas
> copying bmtk/simulator/bionet/schemas/csv_node_types_internal.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/schemas
> copying bmtk/simulator/bionet/schemas/csv_nodes_external.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/schemas
> copying bmtk/simulator/bionet/schemas/csv_nodes_internal.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/bionet/schemas
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/utils/scripts
> copying bmtk/simulator/utils/scripts/convert_filters.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/utils/scripts
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core/sonata_schemas
> copying bmtk/simulator/core/sonata_schemas/config_schema.json -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/core/sonata_schemas
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
> copying bmtk/simulator/filternet/lgnmodel/cell_metrics/sOFF_cell_data.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
> copying bmtk/simulator/filternet/lgnmodel/cell_metrics/sON_cell_data.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
> copying bmtk/simulator/filternet/lgnmodel/cell_metrics/sus_sus_cells_v3.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
> copying bmtk/simulator/filternet/lgnmodel/cell_metrics/tOFF_cell_data.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
> copying bmtk/simulator/filternet/lgnmodel/cell_metrics/tON_cell_data.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
> copying bmtk/simulator/filternet/lgnmodel/cell_metrics/trans_sus_cells_v3.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
> sphinx-apidoc -f -o docs/autodocs/source/bmtk/ bmtk
> Creating file docs/autodocs/source/bmtk/bmtk.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.analyzer.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.analyzer.visualization.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.builder.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.builder.auxi.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.builder.bionet.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.builder.networks.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.simulator.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.simulator.bionet.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.simulator.bionet.default_setters.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.simulator.bionet.modules.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.simulator.core.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.simulator.core.sonata_reader.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.simulator.filternet.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.simulator.filternet.default_setters.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.simulator.filternet.lgnmodel.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.simulator.filternet.modules.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.simulator.pointnet.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.simulator.pointnet.default_setters.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.simulator.pointnet.modules.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.simulator.popnet.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.simulator.popnet.property_schemas.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.simulator.utils.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.simulator.utils.tools.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.tests.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.tests.simulator.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.tests.simulator.bionet.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.tests.simulator.pointnet.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.tests.simulator.popnet.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.utils.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.utils.converters.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.utils.converters.sonata.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.utils.io.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.utils.reports.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.utils.reports.compartment.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.utils.reports.spike_trains.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.utils.sonata.rst.
> Creating file docs/autodocs/source/bmtk/bmtk.utils.sonata.config.rst.
> Creating file docs/autodocs/source/bmtk/modules.rst.
> PYTHONPATH=. python3 -m sphinx -N -bhtml docs/autodocs/source/ build/html # HTML generator
> Running Sphinx v3.3.1
> making output directory... done
> WARNING: html_static_path entry '/usr/share/javascript/requirejs/require.min.js' does not exist
> building [mo]: targets for 0 po files that are out of date
> building [html]: targets for 62 source files that are out of date
> updating environment: [new config] 62 added, 0 changed, 0 removed
> reading sources... [  1%] analyzer
> reading sources... [  3%] bionet
> reading sources... [  4%] bionet_config
> reading sources... [  6%] bionet_tutorial
> reading sources... [  8%] bmtk/bmtk
> reading sources... [  9%] bmtk/bmtk.analyzer
> Matplotlib created a temporary config/cache directory at /tmp/matplotlib-pmobtk1b because the default path (/sbuild-nonexistent/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
> /<<PKGBUILDDIR>>/bmtk/simulator/utils/config.py:4: UserWarning: Please use bmtk.simulator.core.simulation_config instead.
>   warnings.warn('Please use bmtk.simulator.core.simulation_config instead.')
> reading sources... [ 11%] bmtk/bmtk.analyzer.visualization
> reading sources... [ 12%] bmtk/bmtk.builder
> reading sources... [ 14%] bmtk/bmtk.builder.auxi
> reading sources... [ 16%] bmtk/bmtk.builder.bionet
> reading sources... [ 17%] bmtk/bmtk.builder.networks
> reading sources... [ 19%] bmtk/bmtk.simulator
> reading sources... [ 20%] bmtk/bmtk.simulator.bionet
> reading sources... [ 22%] bmtk/bmtk.simulator.bionet.default_setters
> reading sources... [ 24%] bmtk/bmtk.simulator.bionet.modules
> reading sources... [ 25%] bmtk/bmtk.simulator.core
> reading sources... [ 27%] bmtk/bmtk.simulator.core.sonata_reader
> reading sources... [ 29%] bmtk/bmtk.simulator.filternet
> reading sources... [ 30%] bmtk/bmtk.simulator.filternet.default_setters
> reading sources... [ 32%] bmtk/bmtk.simulator.filternet.lgnmodel
> reading sources... [ 33%] bmtk/bmtk.simulator.filternet.modules
> reading sources... [ 35%] bmtk/bmtk.simulator.pointnet
> reading sources... [ 37%] bmtk/bmtk.simulator.pointnet.default_setters
> reading sources... [ 38%] bmtk/bmtk.simulator.pointnet.modules
> reading sources... [ 40%] bmtk/bmtk.simulator.popnet
> reading sources... [ 41%] bmtk/bmtk.simulator.popnet.property_schemas
> reading sources... [ 43%] bmtk/bmtk.simulator.utils
> reading sources... [ 45%] bmtk/bmtk.simulator.utils.tools
> /usr/lib/python3/dist-packages/numpydoc/docscrape.py:418: UserWarning: Unknown section Assumptions in the docstring of <function spikes_to_mean_f_rate at 0xffff7e2381f0> in /<<PKGBUILDDIR>>/bmtk/simulator/utils/tools/process_spikes.py.
>   warn(msg)
> reading sources... [ 46%] bmtk/bmtk.tests
> reading sources... [ 48%] bmtk/bmtk.tests.simulator
> reading sources... [ 50%] bmtk/bmtk.tests.simulator.bionet
> reading sources... [ 51%] bmtk/bmtk.tests.simulator.pointnet
> reading sources... [ 53%] bmtk/bmtk.tests.simulator.popnet
> reading sources... [ 54%] bmtk/bmtk.utils
> reading sources... [ 56%] bmtk/bmtk.utils.converters
> reading sources... [ 58%] bmtk/bmtk.utils.converters.sonata
> reading sources... [ 59%] bmtk/bmtk.utils.io
> reading sources... [ 61%] bmtk/bmtk.utils.reports
> reading sources... [ 62%] bmtk/bmtk.utils.reports.compartment
> reading sources... [ 64%] bmtk/bmtk.utils.reports.spike_trains
> reading sources... [ 66%] bmtk/bmtk.utils.sonata
> reading sources... [ 67%] bmtk/bmtk.utils.sonata.config
> reading sources... [ 69%] bmtk/modules
> reading sources... [ 70%] builder
> reading sources... [ 72%] contributors
> reading sources... [ 74%] examples
> reading sources... [ 75%] filternet
> reading sources... [ 77%] index
> reading sources... [ 79%] installation
> reading sources... [ 80%] network_file_formats
> reading sources... [ 82%] pointnet
> reading sources... [ 83%] popnet
> reading sources... [ 85%] simulators
> reading sources... [ 87%] tutorial_NetworkBuilder_Intro
> reading sources... [ 88%] tutorial_filter_models
> reading sources... [ 90%] tutorial_multi_pop
> reading sources... [ 91%] tutorial_pointnet_modeling
> reading sources... [ 93%] tutorial_population_modeling
> reading sources... [ 95%] tutorial_single_cell_clamped
> reading sources... [ 96%] tutorial_single_cell_syn
> reading sources... [ 98%] tutorial_single_pop
> reading sources... [100%] tutorials
> 
> WARNING: autodoc: failed to import module 'popnet.config' from module 'bmtk.simulator'; the following exception was raised:
> No module named 'dipde'
> WARNING: autodoc: failed to import module 'popnet.popedge' from module 'bmtk.simulator'; the following exception was raised:
> No module named 'dipde'
> WARNING: autodoc: failed to import module 'popnet.popnetwork' from module 'bmtk.simulator'; the following exception was raised:
> No module named 'dipde'
> WARNING: autodoc: failed to import module 'popnet.popnetwork_OLD' from module 'bmtk.simulator'; the following exception was raised:
> No module named 'dipde'
> WARNING: autodoc: failed to import module 'popnet.popnode' from module 'bmtk.simulator'; the following exception was raised:
> No module named 'dipde'
> WARNING: autodoc: failed to import module 'popnet.popsimulator' from module 'bmtk.simulator'; the following exception was raised:
> No module named 'dipde'
> WARNING: autodoc: failed to import module 'popnet' from module 'bmtk.simulator'; the following exception was raised:
> No module named 'dipde'
> WARNING: autodoc: failed to import module 'popnet.property_schemas.base_schema' from module 'bmtk.simulator'; the following exception was raised:
> No module named 'dipde'
> WARNING: autodoc: failed to import module 'popnet.property_schemas.property_schema_ver0' from module 'bmtk.simulator'; the following exception was raised:
> No module named 'dipde'
> WARNING: autodoc: failed to import module 'popnet.property_schemas.property_schema_ver1' from module 'bmtk.simulator'; the following exception was raised:
> No module named 'dipde'
> WARNING: autodoc: failed to import module 'popnet.property_schemas' from module 'bmtk.simulator'; the following exception was raised:
> No module named 'dipde'
> WARNING: autodoc: failed to import module 'hoc_converter' from module 'bmtk.utils.converters'; the following exception was raised:
> No module named 'tqdm'
> /<<PKGBUILDDIR>>/bmtk/utils/io/cell_vars.py:docstring of bmtk.utils.io.cell_vars.CellVarRecorder.DataTable:2: WARNING: Inline emphasis start-string without end-string.
> /<<PKGBUILDDIR>>/docs/autodocs/source/builder.rst:140: WARNING: Inline strong start-string without end-string.
> looking for now-outdated files... none found
> pickling environment... done
> checking consistency... /<<PKGBUILDDIR>>/docs/autodocs/source/bmtk/modules.rst: WARNING: document isn't included in any toctree
> done
> preparing documents... done
> writing output... [  1%] analyzer
> writing output... [  3%] bionet
> writing output... [  4%] bionet_config
> writing output... [  6%] bionet_tutorial
> writing output... [  8%] bmtk/bmtk
> writing output... [  9%] bmtk/bmtk.analyzer
> writing output... [ 11%] bmtk/bmtk.analyzer.visualization
> writing output... [ 12%] bmtk/bmtk.builder
> writing output... [ 14%] bmtk/bmtk.builder.auxi
> writing output... [ 16%] bmtk/bmtk.builder.bionet
> writing output... [ 17%] bmtk/bmtk.builder.networks
> writing output... [ 19%] bmtk/bmtk.simulator
> writing output... [ 20%] bmtk/bmtk.simulator.bionet
> writing output... [ 22%] bmtk/bmtk.simulator.bionet.default_setters
> writing output... [ 24%] bmtk/bmtk.simulator.bionet.modules
> writing output... [ 25%] bmtk/bmtk.simulator.core
> writing output... [ 27%] bmtk/bmtk.simulator.core.sonata_reader
> writing output... [ 29%] bmtk/bmtk.simulator.filternet
> writing output... [ 30%] bmtk/bmtk.simulator.filternet.default_setters
> writing output... [ 32%] bmtk/bmtk.simulator.filternet.lgnmodel
> writing output... [ 33%] bmtk/bmtk.simulator.filternet.modules
> writing output... [ 35%] bmtk/bmtk.simulator.pointnet
> writing output... [ 37%] bmtk/bmtk.simulator.pointnet.default_setters
> writing output... [ 38%] bmtk/bmtk.simulator.pointnet.modules
> writing output... [ 40%] bmtk/bmtk.simulator.popnet
> writing output... [ 41%] bmtk/bmtk.simulator.popnet.property_schemas
> writing output... [ 43%] bmtk/bmtk.simulator.utils
> writing output... [ 45%] bmtk/bmtk.simulator.utils.tools
> writing output... [ 46%] bmtk/bmtk.tests
> writing output... [ 48%] bmtk/bmtk.tests.simulator
> writing output... [ 50%] bmtk/bmtk.tests.simulator.bionet
> writing output... [ 51%] bmtk/bmtk.tests.simulator.pointnet
> writing output... [ 53%] bmtk/bmtk.tests.simulator.popnet
> writing output... [ 54%] bmtk/bmtk.utils
> writing output... [ 56%] bmtk/bmtk.utils.converters
> writing output... [ 58%] bmtk/bmtk.utils.converters.sonata
> writing output... [ 59%] bmtk/bmtk.utils.io
> writing output... [ 61%] bmtk/bmtk.utils.reports
> writing output... [ 62%] bmtk/bmtk.utils.reports.compartment
> writing output... [ 64%] bmtk/bmtk.utils.reports.spike_trains
> writing output... [ 66%] bmtk/bmtk.utils.sonata
> writing output... [ 67%] bmtk/bmtk.utils.sonata.config
> writing output... [ 69%] bmtk/modules
> writing output... [ 70%] builder
> writing output... [ 72%] contributors
> writing output... [ 74%] examples
> writing output... [ 75%] filternet
> writing output... [ 77%] index
> writing output... [ 79%] installation
> writing output... [ 80%] network_file_formats
> writing output... [ 82%] pointnet
> writing output... [ 83%] popnet
> writing output... [ 85%] simulators
> writing output... [ 87%] tutorial_NetworkBuilder_Intro
> writing output... [ 88%] tutorial_filter_models
> writing output... [ 90%] tutorial_multi_pop
> writing output... [ 91%] tutorial_pointnet_modeling
> writing output... [ 93%] tutorial_population_modeling
> writing output... [ 95%] tutorial_single_cell_clamped
> writing output... [ 96%] tutorial_single_cell_syn
> writing output... [ 98%] tutorial_single_pop
> writing output... [100%] tutorials
> 
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_NetworkBuilder_Intro.ipynb:: WARNING: Pygments lexer name 'ipython2' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_NetworkBuilder_Intro.ipynb:: WARNING: Pygments lexer name 'ipython2' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_NetworkBuilder_Intro.ipynb:: WARNING: Pygments lexer name 'ipython2' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_NetworkBuilder_Intro.ipynb:: WARNING: Pygments lexer name 'ipython2' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_NetworkBuilder_Intro.ipynb:: WARNING: Pygments lexer name 'ipython2' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_NetworkBuilder_Intro.ipynb:: WARNING: Pygments lexer name 'ipython2' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_NetworkBuilder_Intro.ipynb:: WARNING: Pygments lexer name 'ipython2' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_NetworkBuilder_Intro.ipynb:: WARNING: Pygments lexer name 'ipython2' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_NetworkBuilder_Intro.ipynb:: WARNING: Pygments lexer name 'ipython2' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_NetworkBuilder_Intro.ipynb:: WARNING: Pygments lexer name 'ipython2' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_filter_models.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_filter_models.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_filter_models.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_filter_models.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_filter_models.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_multi_pop.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_pointnet_modeling.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_population_modeling.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_population_modeling.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_population_modeling.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_population_modeling.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_population_modeling.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_population_modeling.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_population_modeling.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_population_modeling.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_population_modeling.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_clamped.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_clamped.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_clamped.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_clamped.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_clamped.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_clamped.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_clamped.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_clamped.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_clamped.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_cell_syn.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> /<<PKGBUILDDIR>>/docs/autodocs/source/tutorial_single_pop.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known
> generating indices... genindex py-modindex done
> highlighting module code... [  0%] bmtk.analyzer
> highlighting module code... [  1%] bmtk.analyzer.compartment
> highlighting module code... [  1%] bmtk.analyzer.firing_rates
> highlighting module code... [  2%] bmtk.analyzer.io_tools
> highlighting module code... [  2%] bmtk.analyzer.spike_trains
> highlighting module code... [  3%] bmtk.analyzer.spikes_analyzer
> highlighting module code... [  4%] bmtk.analyzer.spikes_loader
> highlighting module code... [  4%] bmtk.analyzer.utils
> highlighting module code... [  5%] bmtk.analyzer.visualization.rasters
> highlighting module code... [  5%] bmtk.analyzer.visualization.spikes
> highlighting module code... [  6%] bmtk.analyzer.visualization.widgets
> highlighting module code... [  7%] bmtk.builder.auxi.edge_connectors
> highlighting module code... [  7%] bmtk.builder.auxi.node_params
> highlighting module code... [  8%] bmtk.builder.bionet.swc_reader
> highlighting module code... [  8%] bmtk.builder.connection_map
> highlighting module code... [  9%] bmtk.builder.connector
> highlighting module code... [ 10%] bmtk.builder.edge
> highlighting module code... [ 10%] bmtk.builder.functor_cache
> highlighting module code... [ 11%] bmtk.builder.id_generator
> highlighting module code... [ 11%] bmtk.builder.iterator
> highlighting module code... [ 12%] bmtk.builder.network
> highlighting module code... [ 13%] bmtk.builder.networks.dm_network
> highlighting module code... [ 13%] bmtk.builder.networks.mpi_network
> highlighting module code... [ 14%] bmtk.builder.networks.nxnetwork
> highlighting module code... [ 14%] bmtk.builder.networks.sparse_network
> highlighting module code... [ 15%] bmtk.builder.node
> highlighting module code... [ 16%] bmtk.builder.node_pool
> highlighting module code... [ 16%] bmtk.builder.node_set
> highlighting module code... [ 17%] bmtk.simulator.bionet.biocell
> highlighting module code... [ 17%] bmtk.simulator.bionet.bionetwork
> highlighting module code... [ 18%] bmtk.simulator.bionet.biosimulator
> highlighting module code... [ 19%] bmtk.simulator.bionet.cell
> highlighting module code... [ 19%] bmtk.simulator.bionet.config
> highlighting module code... [ 20%] bmtk.simulator.bionet.default_setters.cell_models
> highlighting module code... [ 20%] bmtk.simulator.bionet.default_setters.synapse_models
> highlighting module code... [ 21%] bmtk.simulator.bionet.default_setters.synaptic_weights
> highlighting module code... [ 22%] bmtk.simulator.bionet.gids
> highlighting module code... [ 22%] bmtk.simulator.bionet.iclamp
> highlighting module code... [ 23%] bmtk.simulator.bionet.io_tools
> highlighting module code... [ 23%] bmtk.simulator.bionet.modules.ecp
> highlighting module code... [ 24%] bmtk.simulator.bionet.modules.record_cellvars
> highlighting module code... [ 25%] bmtk.simulator.bionet.modules.record_clamp
> highlighting module code... [ 25%] bmtk.simulator.bionet.modules.record_netcons
> highlighting module code... [ 26%] bmtk.simulator.bionet.modules.record_spikes
> highlighting module code... [ 26%] bmtk.simulator.bionet.modules.save_synapses
> highlighting module code... [ 27%] bmtk.simulator.bionet.modules.sim_module
> highlighting module code... [ 28%] bmtk.simulator.bionet.modules.xstim
> highlighting module code... [ 28%] bmtk.simulator.bionet.modules.xstim_waveforms
> highlighting module code... [ 29%] bmtk.simulator.bionet.morphology
> highlighting module code... [ 29%] bmtk.simulator.bionet.nml_reader
> highlighting module code... [ 30%] bmtk.simulator.bionet.nrn
> highlighting module code... [ 31%] bmtk.simulator.bionet.pointprocesscell
> highlighting module code... [ 31%] bmtk.simulator.bionet.pointsomacell
> highlighting module code... [ 32%] bmtk.simulator.bionet.pyfunction_cache
> highlighting module code... [ 32%] bmtk.simulator.bionet.seclamp
> highlighting module code... [ 33%] bmtk.simulator.bionet.sonata_adaptors
> highlighting module code... [ 34%] bmtk.simulator.bionet.utils
> highlighting module code... [ 34%] bmtk.simulator.bionet.virtualcell
> highlighting module code... [ 35%] bmtk.simulator.core.edge_population
> highlighting module code... [ 35%] bmtk.simulator.core.graph
> highlighting module code... [ 36%] bmtk.simulator.core.io_tools
> highlighting module code... [ 37%] bmtk.simulator.core.network_reader
> highlighting module code... [ 37%] bmtk.simulator.core.node_population
> highlighting module code... [ 38%] bmtk.simulator.core.node_sets
> highlighting module code... [ 38%] bmtk.simulator.core.simulation_config
> highlighting module code... [ 39%] bmtk.simulator.core.simulation_config_validator
> highlighting module code... [ 40%] bmtk.simulator.core.simulator
> highlighting module code... [ 40%] bmtk.simulator.core.simulator_network
> highlighting module code... [ 41%] bmtk.simulator.core.sonata_reader.edge_adaptor
> highlighting module code... [ 41%] bmtk.simulator.core.sonata_reader.network_reader
> highlighting module code... [ 42%] bmtk.simulator.core.sonata_reader.node_adaptor
> highlighting module code... [ 43%] bmtk.simulator.filternet.cell
> highlighting module code... [ 43%] bmtk.simulator.filternet.config
> highlighting module code... [ 44%] bmtk.simulator.filternet.default_setters.cell_loaders
> highlighting module code... [ 44%] bmtk.simulator.filternet.filternetwork
> highlighting module code... [ 45%] bmtk.simulator.filternet.filtersimulator
> highlighting module code... [ 46%] bmtk.simulator.filternet.io_tools
> highlighting module code... [ 46%] bmtk.simulator.filternet.lgnmodel.cellmetrics
> highlighting module code... [ 47%] bmtk.simulator.filternet.lgnmodel.cellmodel
> highlighting module code... [ 47%] bmtk.simulator.filternet.lgnmodel.cursor
> highlighting module code... [ 48%] bmtk.simulator.filternet.lgnmodel.fitfuns
> highlighting module code... [ 49%] bmtk.simulator.filternet.lgnmodel.kernel
> highlighting module code... [ 49%] bmtk.simulator.filternet.lgnmodel.lattice_unit_constructor
> highlighting module code... [ 50%] bmtk.simulator.filternet.lgnmodel.lgnmodel1
> highlighting module code... [ 50%] bmtk.simulator.filternet.lgnmodel.linearfilter
> highlighting module code... [ 51%] bmtk.simulator.filternet.lgnmodel.lnunit
> highlighting module code... [ 52%] bmtk.simulator.filternet.lgnmodel.make_cell_list
> highlighting module code... [ 52%] bmtk.simulator.filternet.lgnmodel.movie
> highlighting module code... [ 53%] bmtk.simulator.filternet.lgnmodel.poissongeneration
> highlighting module code... [ 53%] bmtk.simulator.filternet.lgnmodel.spatialfilter
> highlighting module code... [ 54%] bmtk.simulator.filternet.lgnmodel.temporalfilter
> highlighting module code... [ 55%] bmtk.simulator.filternet.lgnmodel.transferfunction
> highlighting module code... [ 55%] bmtk.simulator.filternet.lgnmodel.util_fns
> highlighting module code... [ 56%] bmtk.simulator.filternet.lgnmodel.utilities
> highlighting module code... [ 56%] bmtk.simulator.filternet.modules.base
> highlighting module code... [ 57%] bmtk.simulator.filternet.modules.create_spikes
> highlighting module code... [ 58%] bmtk.simulator.filternet.modules.record_rates
> highlighting module code... [ 58%] bmtk.simulator.filternet.pyfunction_cache
> highlighting module code... [ 59%] bmtk.simulator.filternet.sonata_adaptors
> highlighting module code... [ 59%] bmtk.simulator.pointnet.config
> highlighting module code... [ 60%] bmtk.simulator.pointnet.default_setters.synapse_models
> highlighting module code... [ 61%] bmtk.simulator.pointnet.default_setters.synaptic_weights
> highlighting module code... [ 61%] bmtk.simulator.pointnet.gids
> highlighting module code... [ 62%] bmtk.simulator.pointnet.glif_utils
> highlighting module code... [ 62%] bmtk.simulator.pointnet.io_tools
> highlighting module code... [ 63%] bmtk.simulator.pointnet.modules.multimeter_reporter
> highlighting module code... [ 64%] bmtk.simulator.pointnet.modules.record_spikes
> highlighting module code... [ 64%] bmtk.simulator.pointnet.pointnetwork
> highlighting module code... [ 65%] bmtk.simulator.pointnet.pointsimulator
> highlighting module code... [ 65%] bmtk.simulator.pointnet.property_map
> highlighting module code... [ 66%] bmtk.simulator.pointnet.pyfunction_cache
> highlighting module code... [ 67%] bmtk.simulator.pointnet.sonata_adaptors
> highlighting module code... [ 67%] bmtk.simulator.pointnet.utils
> highlighting module code... [ 68%] bmtk.simulator.popnet.sonata_adaptors
> highlighting module code... [ 68%] bmtk.simulator.popnet.utils
> highlighting module code... [ 69%] bmtk.simulator.utils.graph
> highlighting module code... [ 70%] bmtk.simulator.utils.property_maps
> highlighting module code... [ 70%] bmtk.simulator.utils.simulation_inputs
> highlighting module code... [ 71%] bmtk.simulator.utils.simulation_reports
> highlighting module code... [ 71%] bmtk.simulator.utils.tools.process_spikes
> highlighting module code... [ 72%] bmtk.simulator.utils.tools.spatial
> highlighting module code... [ 73%] bmtk.tests.simulator.bionet.bionet_virtual_files
> highlighting module code... [ 73%] bmtk.tests.simulator.bionet.set_cell_params
> highlighting module code... [ 74%] bmtk.tests.simulator.bionet.set_syn_params
> highlighting module code... [ 74%] bmtk.tests.simulator.bionet.set_weights
> highlighting module code... [ 75%] bmtk.tests.simulator.bionet.test_biograph
> highlighting module code... [ 76%] bmtk.tests.simulator.bionet.test_gids
> highlighting module code... [ 76%] bmtk.tests.simulator.bionet.test_nrn
> highlighting module code... [ 77%] bmtk.tests.simulator.pointnet.pointnet_virtual_files
> highlighting module code... [ 77%] bmtk.tests.simulator.pointnet.test_glif_utils
> highlighting module code... [ 78%] bmtk.tests.simulator.pointnet.test_pointgraph
> highlighting module code... [ 79%] bmtk.tests.simulator.popnet.popnet_virtual_files
> highlighting module code... [ 79%] bmtk.tests.simulator.popnet.test_popgraph
> highlighting module code... [ 80%] bmtk.utils.converters.sonata.edge_converters
> highlighting module code... [ 80%] bmtk.utils.converters.sonata.node_converters
> highlighting module code... [ 81%] bmtk.utils.hdf5_helper
> highlighting module code... [ 82%] bmtk.utils.io
> highlighting module code... [ 82%] bmtk.utils.io.cell_vars
> highlighting module code... [ 83%] bmtk.utils.io.firing_rates
> highlighting module code... [ 83%] bmtk.utils.io.ioutils
> highlighting module code... [ 84%] bmtk.utils.io.spike_trains
> highlighting module code... [ 85%] bmtk.utils.property_schema
> highlighting module code... [ 85%] bmtk.utils.reports.compartment.compartment_reader
> highlighting module code... [ 86%] bmtk.utils.reports.compartment.compartment_report
> highlighting module code... [ 86%] bmtk.utils.reports.compartment.compartment_writer
> highlighting module code... [ 87%] bmtk.utils.reports.compartment.core
> highlighting module code... [ 88%] bmtk.utils.reports.compartment.plotting
> highlighting module code... [ 88%] bmtk.utils.reports.current_writer
> highlighting module code... [ 89%] bmtk.utils.reports.spike_trains.core
> highlighting module code... [ 89%] bmtk.utils.reports.spike_trains.plotting
> highlighting module code... [ 90%] bmtk.utils.reports.spike_trains.spike_train_buffer
> highlighting module code... [ 91%] bmtk.utils.reports.spike_trains.spike_train_readers
> highlighting module code... [ 91%] bmtk.utils.reports.spike_trains.spike_trains
> highlighting module code... [ 92%] bmtk.utils.reports.spike_trains.spike_trains_api
> highlighting module code... [ 92%] bmtk.utils.reports.spike_trains.spikes_file_writers
> highlighting module code... [ 93%] bmtk.utils.reports.spike_trains.stats
> highlighting module code... [ 94%] bmtk.utils.sim_setup
> highlighting module code... [ 94%] bmtk.utils.sonata.column_property
> highlighting module code... [ 95%] bmtk.utils.sonata.config.sonata_config
> highlighting module code... [ 95%] bmtk.utils.sonata.edge
> highlighting module code... [ 96%] bmtk.utils.sonata.file
> highlighting module code... [ 97%] bmtk.utils.sonata.file_root
> highlighting module code... [ 97%] bmtk.utils.sonata.group
> highlighting module code... [ 98%] bmtk.utils.sonata.node
> highlighting module code... [ 98%] bmtk.utils.sonata.population
> highlighting module code... [ 99%] bmtk.utils.sonata.types_table
> highlighting module code... [100%] bmtk.utils.sonata.utils
> 
> writing additional pages... search done
> copying images... [  2%] _static/images/bmtk_architecture_analyzer_highlight.jpg
> copying images... [  4%] _static/images/spikes_report.png
> copying images... [  6%] _static/images/cell_reports.png
> copying images... [  8%] _static/images/segmentation_indexing.jpg
> copying images... [ 10%] _static/images/bmtk_architecture_bionet_highlight.jpg
> copying images... [ 13%] _static/images/all_network_cropped.png
> copying images... [ 15%] _static/images/ext_inputs_raster.png
> copying images... [ 17%] _static/images/v1_raster.png
> copying images... [ 19%] _static/images/bmtk_architecture_builder_highlight.jpg
> copying images... [ 21%] _static/images/builder_add_nodes.jpg
> copying images... [ 23%] _static/images/builder_add_edges.jpg
> copying images... [ 26%] _static/images/builder_complete_network.jpg
> copying images... [ 28%] _static/images/sonata_structure.jpg
> copying images... [ 30%] _static/images/bmtk_architecture_filternet_highlight.jpg
> copying images... [ 32%] _static/images/lnp_model.jpg
> copying images... [ 34%] _static/images/levels_of_resolution_noml.png
> copying images... [ 36%] _static/images/bmtk_workflow.jpg
> copying images... [ 39%] _static/images/bmtk_architecture.jpg
> copying images... [ 41%] _static/images/graph_structure.png
> copying images... [ 43%] _static/images/nodes_h5_structure.png
> copying images... [ 45%] _static/images/node_types.png
> copying images... [ 47%] _static/images/edges_h5_structure.png
> copying images... [ 50%] _static/images/edge_types.png
> copying images... [ 52%] _static/images/bmtk_architecture_pointnet_highlight.jpg
> copying images... [ 54%] _static/images/bmtk_architecture_popnet_highlight.jpg
> copying images... [ 56%] _static/images/bmtk_architecture_simulator_highlight.jpg
> copying images... [ 58%] _static/images/brunel_comparisons.jpg
> copying images... [ 60%] _static/images/bmtk_sim_env.png
> copying images... [ 63%] _static/_tutorial_images/bmtk_lnp.png
> copying images... [ 65%] ../../../build/html/.doctrees/nbsphinx/tutorial_filter_models_9_1.png
> copying images... [ 67%] _static/_tutorial_images/filternet_sfilt_params.png
> copying images... [ 69%] _static/_tutorial_images/filternet_tfilt_params.png
> copying images... [ 71%] ../../../build/html/.doctrees/nbsphinx/tutorial_multi_pop_26_0.png
> copying images... [ 73%] ../../../build/html/.doctrees/nbsphinx/tutorial_multi_pop_28_0.png
> copying images... [ 76%] ../../../build/html/.doctrees/nbsphinx/tutorial_multi_pop_30_0.png
> copying images... [ 78%] ../../../build/html/.doctrees/nbsphinx/tutorial_pointnet_modeling_27_0.png
> copying images... [ 80%] ../../../build/html/.doctrees/nbsphinx/tutorial_pointnet_modeling_29_0.png
> copying images... [ 82%] ../../../build/html/.doctrees/nbsphinx/tutorial_pointnet_modeling_33_0.png
> copying images... [ 84%] ../../../build/html/.doctrees/nbsphinx/tutorial_population_modeling_18_0.png
> copying images... [ 86%] ../../../build/html/.doctrees/nbsphinx/tutorial_single_cell_clamped_16_0.png
> copying images... [ 89%] ../../../build/html/.doctrees/nbsphinx/tutorial_single_cell_clamped_16_1.png
> copying images... [ 91%] ../../../build/html/.doctrees/nbsphinx/tutorial_single_cell_syn_22_0.png
> copying images... [ 93%] ../../../build/html/.doctrees/nbsphinx/tutorial_single_cell_syn_22_1.png
> copying images... [ 95%] ../../../build/html/.doctrees/nbsphinx/tutorial_single_pop_19_0.png
> copying images... [ 97%] ../../../build/html/.doctrees/nbsphinx/tutorial_single_pop_21_0.png
> copying images... [100%] ../../../build/html/.doctrees/nbsphinx/tutorial_single_pop_21_1.png
> 
> copying static files... done
> copying extra files... done
> dumping search index in English (code: en)... done
> dumping object inventory... done
> build succeeded, 104 warnings.
> 
> The HTML pages are in build/html.
> numprocs=1
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
>    dh_auto_test -O--buildsystem=pybuild
> I: pybuild base:232: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build; python3.8 -m pytest 
> ============================= test session starts ==============================
> platform linux -- Python 3.8.6, pytest-4.6.11, py-1.9.0, pluggy-0.13.0
> rootdir: /<<PKGBUILDDIR>>
> collected 274 items / 2 skipped / 272 selected
> 
> bmtk/tests/builder/test_connection_map.py .......                        [  2%]
> bmtk/tests/builder/test_connector.py .....                               [  4%]
> bmtk/tests/builder/test_densenetwork.py ...                              [  5%]
> bmtk/tests/builder/test_edge_iterator.py ...                             [  6%]
> bmtk/tests/builder/test_id_generator.py ....                             [  8%]
> bmtk/tests/builder/test_iterator.py ........                             [ 10%]
> bmtk/tests/builder/test_network.py ..........                            [ 14%]
> bmtk/tests/builder/test_node_pool.py .....                               [ 16%]
> bmtk/tests/builder/test_node_set.py ...                                  [ 17%]
> bmtk/tests/builder/auxi/test_edge_connectors.py ..                       [ 18%]
> bmtk/tests/builder/auxi/test_node_params.py ...                          [ 19%]
> bmtk/tests/simulator/bionet/test_biograph.py ss                          [ 20%]
> bmtk/tests/simulator/bionet/test_gids.py s                               [ 20%]
> bmtk/tests/simulator/bionet/test_nrn.py sssssss                          [ 22%]
> bmtk/tests/simulator/core/test_io_tools.py ..                            [ 23%]
> bmtk/tests/simulator/core/test_simulation_config.py ..                   [ 24%]
> bmtk/tests/simulator/core/test_simulation_config_validator.py ...        [ 25%]
> bmtk/tests/simulator/filternet/test_default_setters.py sssssssssssssssss [ 31%]
> .                                                                        [ 32%]
> bmtk/tests/simulator/filternet/lgnmodel/test_kernels.py F..              [ 33%]
> bmtk/tests/simulator/filternet/lgnmodel/test_movie.py ...                [ 34%]
> bmtk/tests/simulator/filternet/lgnmodel/test_subclass_metrics.py ......  [ 36%]
> bmtk/tests/simulator/filternet/lgnmodel/test_transferfunction.py .       [ 36%]
> bmtk/tests/simulator/filternet/lgnmodel/test_units.py ....               [ 38%]
> bmtk/tests/simulator/filternet/lgnmodel/test_utils.py .                  [ 38%]
> bmtk/tests/simulator/pointnet/test_pointgraph.py ss                      [ 39%]
> bmtk/tests/simulator/popnet/test_popgraph.py s                           [ 39%]
> bmtk/tests/simulator/utils/test_simulation_inputs.py .....               [ 41%]
> bmtk/tests/simulator/utils/test_simulation_reports.py ....               [ 43%]
> bmtk/tests/utils/reports/compartment/test_compartment_reader.py ..       [ 43%]
> bmtk/tests/utils/reports/compartment/test_compartment_writer.py ......   [ 45%]
> bmtk/tests/utils/reports/compartment/test_plotting.py ......             [ 48%]
> bmtk/tests/utils/reports/spike_trains/test_csv_adaptor.py .............. [ 53%]
>                                                                          [ 53%]
> bmtk/tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py .......... [ 56%]
> ......                                                                   [ 59%]
> bmtk/tests/utils/reports/spike_trains/test_plotting.py ................. [ 65%]
> ...                                                                      [ 66%]
> bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor.py ........... [ 70%]
> ............                                                             [ 74%]
> bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py ....... [ 77%]
> .........                                                                [ 80%]
> bmtk/tests/utils/reports/spike_trains/test_spikes_buffer.py ............ [ 85%]
> ......                                                                   [ 87%]
> bmtk/tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py ........ [ 90%]
> ..ss....                                                                 [ 93%]
> bmtk/tests/utils/reports/spike_trains/test_spikes_core.py ....           [ 94%]
> bmtk/tests/utils/sonata/test_config.py ...........                       [ 98%]
> bmtk/tests/utils/sonata/test_config_validator.py ....                    [100%]
> 
> =================================== FAILURES ===================================
> __________________________ test_spatialfilter_kernel ___________________________
> 
>     def test_spatialfilter_kernel():
>         mv = movie.Movie(np.zeros((1001, 120, 240)), t_range=np.linspace(0.0, 1.0, 1001, endpoint=True))
>     
>         gsf = GaussianSpatialFilter(translate=(-80, -20), sigma=(30, 10), rotation=15.0)
>         kernel = gsf.get_kernel(row_range=mv.row_range, col_range=mv.col_range)
>         assert(isinstance(kernel, Kernel2D))
>         assert(kernel.full().shape == (120, 240))
> >       assert(np.sum(kernel.full()) == 1.0)
> E       assert 1.0000000000000002 == 1.0
> E        +  where 1.0000000000000002 = <function sum at 0xffffac297dc0>(array([[3.3561e-06, 3.2941e-06, 3.2129e-06, ..., 0.0000e+00, 0.0000e+00,\n        0.0000e+00],\n       [4.4275e-06, 4.35...00,\n        0.0000e+00],\n       [0.0000e+00, 0.0000e+00, 0.0000e+00, ..., 0.0000e+00, 0.0000e+00,\n        0.0000e+00]]))
> E        +    where <function sum at 0xffffac297dc0> = np.sum
> E        +    and   array([[3.3561e-06, 3.2941e-06, 3.2129e-06, ..., 0.0000e+00, 0.0000e+00,\n        0.0000e+00],\n       [4.4275e-06, 4.35...00,\n        0.0000e+00],\n       [0.0000e+00, 0.0000e+00, 0.0000e+00, ..., 0.0000e+00, 0.0000e+00,\n        0.0000e+00]]) = <bound method Kernel2D.full of <bmtk.simulator.filternet.lgnmodel.kernel.Kernel2D object at 0xffff962bfd00>>()
> E        +      where <bound method Kernel2D.full of <bmtk.simulator.filternet.lgnmodel.kernel.Kernel2D object at 0xffff962bfd00>> = <bmtk.simulator.filternet.lgnmodel.kernel.Kernel2D object at 0xffff962bfd00>.full
> 
> bmtk/tests/simulator/filternet/lgnmodel/test_kernels.py:18: AssertionError
> =============================== warnings summary ===============================
> bmtk/utils/sonata/config/sonata_config.py:400
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/sonata/config/sonata_config.py:400: DeprecationWarning: invalid escape sequence \$
>     variables = [m for m in re.finditer('\$\{?[\w]+\}?', json_str)]
> 
> bmtk/simulator/filternet/lgnmodel/util_fns.py:51
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/simulator/filternet/lgnmodel/util_fns.py:51: DeprecationWarning: invalid escape sequence \D
>     gr_fnames_ord = sorted(gr_fnames, key=lambda x: (int(re.sub('\D', '', x)), x))
> 
> .pybuild/cpython3_3.8/build/bmtk/tests/simulator/filternet/test_default_setters.py::test_sONtOFF[sONsOFF_001-expected_val0]
> .pybuild/cpython3_3.8/build/bmtk/tests/simulator/filternet/test_default_setters.py::test_sONtOFF[sONsOFF_001-expected_val0]
> .pybuild/cpython3_3.8/build/bmtk/tests/simulator/filternet/lgnmodel/test_kernels.py::test_spatialfilter_kernel
> .pybuild/cpython3_3.8/build/bmtk/tests/simulator/filternet/lgnmodel/test_kernels.py::test_spatiotemporalfilter_kernel
> .pybuild/cpython3_3.8/build/bmtk/tests/simulator/filternet/lgnmodel/test_units.py::test_onunit
> .pybuild/cpython3_3.8/build/bmtk/tests/simulator/filternet/lgnmodel/test_units.py::test_offunit
> .pybuild/cpython3_3.8/build/bmtk/tests/simulator/filternet/lgnmodel/test_units.py::test_lgnonoffcell
> .pybuild/cpython3_3.8/build/bmtk/tests/simulator/filternet/lgnmodel/test_units.py::test_lgnonoffcell
> .pybuild/cpython3_3.8/build/bmtk/tests/simulator/filternet/lgnmodel/test_units.py::test_twosubfieldlinearcell
> .pybuild/cpython3_3.8/build/bmtk/tests/simulator/filternet/lgnmodel/test_units.py::test_twosubfieldlinearcell
>   /usr/lib/python3/dist-packages/skimage/util/dtype.py:226: DeprecationWarning: Converting `np.inexact` or `np.floating` to a dtype is deprecated. The current result is `float64` which is not strictly correct.
>     dtypeobj_out = np.dtype(dtype)
> 
> .pybuild/cpython3_3.8/build/bmtk/tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[None-None]
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/reports/spike_trains/plotting.py:239: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`).
>     fig, axes = plt.subplots()
> 
> .pybuild/cpython3_3.8/build/bmtk/tests/utils/sonata/test_config.py::test_json
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/sonata/config/sonata_config.py:243: DeprecationWarning: Deprecated: Please use SonataConfig.from_json() instead.
>     warnings.warn('Deprecated: Please use SonataConfig.from_json() instead.', DeprecationWarning)
> 
> .pybuild/cpython3_3.8/build/bmtk/tests/utils/sonata/test_config.py::test_dict
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/bmtk/utils/sonata/config/sonata_config.py:231: DeprecationWarning: Deprecated: Please use SonataConfig.from_dict() instead.
>     warnings.warn('Deprecated: Please use SonataConfig.from_dict() instead.', DeprecationWarning)
> 
> -- Docs: https://docs.pytest.org/en/latest/warnings.html
> ======== 1 failed, 241 passed, 34 skipped, 15 warnings in 23.39 seconds ========
> E: pybuild pybuild:353: test: plugin distutils failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build; python3.8 -m pytest 
> I: pybuild base:232: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build; python3.9 -m pytest 
> ============================= test session starts ==============================
> platform linux -- Python 3.9.1rc1, pytest-4.6.11, py-1.9.0, pluggy-0.13.0
> rootdir: /<<PKGBUILDDIR>>
> Warning: no DISPLAY environment variable.
> --No graphics will be displayed.
> collected 275 items / 1 skipped / 274 selected
> 
> bmtk/tests/builder/test_connection_map.py .......                        [  2%]
> bmtk/tests/builder/test_connector.py .....                               [  4%]
> bmtk/tests/builder/test_densenetwork.py ...                              [  5%]
> bmtk/tests/builder/test_edge_iterator.py ...                             [  6%]
> bmtk/tests/builder/test_id_generator.py ....                             [  8%]
> bmtk/tests/builder/test_iterator.py ........                             [ 10%]
> bmtk/tests/builder/test_network.py ..........                            [ 14%]
> bmtk/tests/builder/test_node_pool.py .....                               [ 16%]
> bmtk/tests/builder/test_node_set.py ...                                  [ 17%]
> bmtk/tests/builder/auxi/test_edge_connectors.py ..                       [ 18%]
> bmtk/tests/builder/auxi/test_node_params.py ...                          [ 19%]
> bmtk/tests/builder/bionet/test_swc_reader.py .                           [ 19%]
> bmtk/tests/simulator/bionet/test_biograph.py ss                          [ 20%]
> bmtk/tests/simulator/bionet/test_gids.py .                               [ 20%]
> bmtk/tests/simulator/bionet/test_nrn.py ....sss                          [ 23%]
> bmtk/tests/simulator/core/test_io_tools.py ..                            [ 24%]
> bmtk/tests/simulator/core/test_simulation_config.py ..                   [ 24%]
> bmtk/tests/simulator/core/test_simulation_config_validator.py ...        [ 25%]
> bmtk/tests/simulator/filternet/test_default_setters.py sssssssssssssssss [ 32%]
> .                                                                        [ 32%]
> bmtk/tests/simulator/filternet/lgnmodel/test_kernels.py F..              [ 33%]
> bmtk/tests/simulator/filternet/lgnmodel/test_movie.py ...                [ 34%]
> bmtk/tests/simulator/filternet/lgnmodel/test_subclass_metrics.py ......  [ 36%]
> bmtk/tests/simulator/filternet/lgnmodel/test_transferfunction.py .       [ 37%]
> bmtk/tests/simulator/filternet/lgnmodel/test_units.py ....               [ 38%]
> bmtk/tests/simulator/filternet/lgnmodel/test_utils.py .                  [ 38%]
> bmtk/tests/simulator/pointnet/test_pointgraph.py ss                      [ 39%]
> bmtk/tests/simulator/popnet/test_popgraph.py s                           [ 40%]
> bmtk/tests/simulator/utils/test_simulation_inputs.py .....               [ 41%]
> bmtk/tests/simulator/utils/test_simulation_reports.py ....               [ 43%]
> bmtk/tests/utils/reports/compartment/test_compartment_reader.py ..       [ 44%]
> bmtk/tests/utils/reports/compartment/test_compartment_writer.py ......   [ 46%]
> bmtk/tests/utils/reports/compartment/test_plotting.py ......             [ 48%]
> bmtk/tests/utils/reports/spike_trains/test_csv_adaptor.py .............. [ 53%]
>                                                                          [ 53%]
> bmtk/tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py .......... [ 57%]
> ......                                                                   [ 59%]
> bmtk/tests/utils/reports/spike_trains/test_plotting.py ................. [ 65%]
> ...                                                                      [ 66%]
> bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor.py ........... [ 70%]
> ............                                                             [ 74%]
> bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py ....... [ 77%]
> .........                                                                [ 80%]
> bmtk/tests/utils/reports/spike_trains/test_spikes_buffer.py ............ [ 85%]
> ......                                                                   [ 87%]
> bmtk/tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py ........ [ 90%]
> ..ss....                                                                 [ 93%]
> bmtk/tests/utils/reports/spike_trains/test_spikes_core.py ....           [ 94%]
> bmtk/tests/utils/sonata/test_config.py ...........                       [ 98%]
> bmtk/tests/utils/sonata/test_config_validator.py ....                    [100%]
> 
> =================================== FAILURES ===================================
> __________________________ test_spatialfilter_kernel ___________________________
> 
>     def test_spatialfilter_kernel():
>         mv = movie.Movie(np.zeros((1001, 120, 240)), t_range=np.linspace(0.0, 1.0, 1001, endpoint=True))
>     
>         gsf = GaussianSpatialFilter(translate=(-80, -20), sigma=(30, 10), rotation=15.0)
>         kernel = gsf.get_kernel(row_range=mv.row_range, col_range=mv.col_range)
>         assert(isinstance(kernel, Kernel2D))
>         assert(kernel.full().shape == (120, 240))
> >       assert(np.sum(kernel.full()) == 1.0)
> E       assert 1.0000000000000002 == 1.0
> E        +  where 1.0000000000000002 = <function sum at 0xffff7f89d820>(array([[3.3561e-06, 3.2941e-06, 3.2129e-06, ..., 0.0000e+00, 0.0000e+00,\n        0.0000e+00],\n       [4.4275e-06, 4.35...00,\n        0.0000e+00],\n       [0.0000e+00, 0.0000e+00, 0.0000e+00, ..., 0.0000e+00, 0.0000e+00,\n        0.0000e+00]]))
> E        +    where <function sum at 0xffff7f89d820> = np.sum
> E        +    and   array([[3.3561e-06, 3.2941e-06, 3.2129e-06, ..., 0.0000e+00, 0.0000e+00,\n        0.0000e+00],\n       [4.4275e-06, 4.35...00,\n        0.0000e+00],\n       [0.0000e+00, 0.0000e+00, 0.0000e+00, ..., 0.0000e+00, 0.0000e+00,\n        0.0000e+00]]) = <bound method Kernel2D.full of <bmtk.simulator.filternet.lgnmodel.kernel.Kernel2D object at 0xffff69b81430>>()
> E        +      where <bound method Kernel2D.full of <bmtk.simulator.filternet.lgnmodel.kernel.Kernel2D object at 0xffff69b81430>> = <bmtk.simulator.filternet.lgnmodel.kernel.Kernel2D object at 0xffff69b81430>.full
> 
> bmtk/tests/simulator/filternet/lgnmodel/test_kernels.py:18: AssertionError
> =============================== warnings summary ===============================
> bmtk/utils/sonata/config/sonata_config.py:400
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/sonata/config/sonata_config.py:400: DeprecationWarning: invalid escape sequence \$
>     variables = [m for m in re.finditer('\$\{?[\w]+\}?', json_str)]
> 
> bmtk/simulator/filternet/lgnmodel/util_fns.py:51
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/simulator/filternet/lgnmodel/util_fns.py:51: DeprecationWarning: invalid escape sequence \D
>     gr_fnames_ord = sorted(gr_fnames, key=lambda x: (int(re.sub('\D', '', x)), x))
> 
> .pybuild/cpython3_3.9/build/bmtk/tests/simulator/filternet/test_default_setters.py::test_sONtOFF[sONsOFF_001-expected_val0]
> .pybuild/cpython3_3.9/build/bmtk/tests/simulator/filternet/test_default_setters.py::test_sONtOFF[sONsOFF_001-expected_val0]
> .pybuild/cpython3_3.9/build/bmtk/tests/simulator/filternet/lgnmodel/test_kernels.py::test_spatialfilter_kernel
> .pybuild/cpython3_3.9/build/bmtk/tests/simulator/filternet/lgnmodel/test_kernels.py::test_spatiotemporalfilter_kernel
> .pybuild/cpython3_3.9/build/bmtk/tests/simulator/filternet/lgnmodel/test_units.py::test_onunit
> .pybuild/cpython3_3.9/build/bmtk/tests/simulator/filternet/lgnmodel/test_units.py::test_offunit
> .pybuild/cpython3_3.9/build/bmtk/tests/simulator/filternet/lgnmodel/test_units.py::test_lgnonoffcell
> .pybuild/cpython3_3.9/build/bmtk/tests/simulator/filternet/lgnmodel/test_units.py::test_lgnonoffcell
> .pybuild/cpython3_3.9/build/bmtk/tests/simulator/filternet/lgnmodel/test_units.py::test_twosubfieldlinearcell
> .pybuild/cpython3_3.9/build/bmtk/tests/simulator/filternet/lgnmodel/test_units.py::test_twosubfieldlinearcell
>   /usr/lib/python3/dist-packages/skimage/util/dtype.py:226: DeprecationWarning: Converting `np.inexact` or `np.floating` to a dtype is deprecated. The current result is `float64` which is not strictly correct.
>     dtypeobj_out = np.dtype(dtype)
> 
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[None-None]
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/reports/spike_trains/plotting.py:239: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`).
>     fig, axes = plt.subplots()
> 
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/sonata/test_config.py::test_json
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/sonata/config/sonata_config.py:243: DeprecationWarning: Deprecated: Please use SonataConfig.from_json() instead.
>     warnings.warn('Deprecated: Please use SonataConfig.from_json() instead.', DeprecationWarning)
> 
> .pybuild/cpython3_3.9/build/bmtk/tests/utils/sonata/test_config.py::test_dict
>   /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/bmtk/utils/sonata/config/sonata_config.py:231: DeprecationWarning: Deprecated: Please use SonataConfig.from_dict() instead.
>     warnings.warn('Deprecated: Please use SonataConfig.from_dict() instead.', DeprecationWarning)
> 
> -- Docs: https://docs.pytest.org/en/latest/warnings.html
> ======== 1 failed, 247 passed, 28 skipped, 15 warnings in 23.14 seconds ========
> E: pybuild pybuild:353: test: plugin distutils failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build; python3.9 -m pytest 
> dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.8 3.9" returned exit code 13

The full build log is available from:
   http://qa-logs.debian.net/2020/12/05/bmtk_0.0+git20201018.018da0a+ds-1_unstable.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with me
so that we can identify if something relevant changed in the meantime.

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.