[Debian-med-packaging] Bug#976570: libstatgen: FTBFS on arm64: E: Build killed with signal TERM after 150 minutes of inactivity

[Lucas Nussbaum]

Source: libstatgen
Version: 1.0.14-7
Severity: serious
Justification: FTBFS on arm64
Tags: bullseye sid ftbfs
Usertags: ftbfs-20201205 ftbfs-bullseye

Hi,

During a rebuild of all packages in sid, your package failed to build
on arm64 (I don't know if it also fails on amd64).

Relevant part (hopefully):
> inputFileTest: InputFileTest.cpp:466: void IFILE_Test::test_ifread_ifgetc(const char*): Assertion `readChar == EOF' failed.
> Aborted
> make[4]: *** [../../../Makefiles/Makefile.test:53: test] Error 134
> make[3]: *** [Makefile:24: inputFileTest] Error 2
> make[3]: *** Waiting for unfinished jobs....
> g++  -O0 -pipe -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now  -I../../../include -I.   -D__ZLIB_AVAILABLE__ -D_FILE_OFFSET_BITS=64 -D__STDC_LIMIT_MACROS  -o  cigarRollerTest obj/CigarRollerTest.o ../../../libStatGen_debug.a -lm -lz 
> g++  -O0 -pipe -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now  -I../../../include -I.   -D__ZLIB_AVAILABLE__ -D_FILE_OFFSET_BITS=64 -D__STDC_LIMIT_MACROS  -o  memoryMapArrayTest obj/MemoryMapArrayTest.o ../../../libStatGen_debug.a -lm -lz 
> mkdir -p results; ./cigarRollerTest
> 
> CigarRoller PASS: 646  FAIL: 0
> mkdir -p results; ./memoryMapArrayTest
> MemoryMapArrayTest PASS: 108  FAIL: 0
> g++  -O0 -pipe -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now  -I../../../include -I.   -D__ZLIB_AVAILABLE__ -D_FILE_OFFSET_BITS=64 -D__STDC_LIMIT_MACROS  -o  referenceSequenceTest obj/ReferenceSequenceTest.o ../../../libStatGen_debug.a -lm -lz 
> ./referenceSequenceTest
> test2 sequence utilization is 6.25% - expect around 6.25%
> E: Build killed with signal TERM after 150 minutes of inactivity

The full build log is available from:
   http://qa-logs.debian.net/2020/12/05/libstatgen_1.0.14-7_unstable.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with me
so that we can identify if something relevant changed in the meantime.

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.