[Debian-med-packaging] Bug#976572: bio-eagle: FTBFS: MemoryUtils.hpp:34:10: fatal error: xmmintrin.h: No such file or directory

[Andreas Tille]

Control: tags -1 help

Hi Lucas,

On Sat, Dec 05, 2020 at 01:15:52PM +0100, Lucas Nussbaum wrote:
> During a rebuild of all packages in sid, your package failed to build
> on arm64 (I don't know if it also fails on amd64).

I admit I have currently no chance to test on arm64 but the package
builds fine on amd64 since the include file is part of libgcc-dev

Any help from the arm team is welcome

      Andreas.
 
> Relevant part (hopefully):
> > g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -std=c++0x -fopenmp -Wall -Wdate-time -D_FORTIFY_SOURCE=2  -o EagleImpMiss.o -c EagleImpMiss.cpp
> > In file included from EagleImpMiss.cpp:24:
> > MemoryUtils.hpp:34:10: fatal error: xmmintrin.h: No such file or directory
> >    34 | #include <xmmintrin.h>
> >       |          ^~~~~~~~~~~~~
> > compilation terminated.
> > make[1]: *** [Makefile:108: EagleImpMiss.o] Error 1
> 
> The full build log is available from:
>    http://qa-logs.debian.net/2020/12/05/bio-eagle_2.4.1-2_unstable.log
> 
> A list of current common problems and possible solutions is available at
> http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
> 
> If you reassign this bug to another package, please marking it as 'affects'-ing
> this package. See https://www.debian.org/Bugs/server-control#affects
> 
> If you fail to reproduce this, please provide a build log and diff it with me
> so that we can identify if something relevant changed in the meantime.
> 
> About the archive rebuild: The rebuild was done on EC2 VM instances from
> Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
> failed build was retried once to eliminate random failures.
> 
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