[Debian-med-packaging] Bug#976567: libhmsbeagle: FTBFS: GPUInterface.h:221:27: error: there are no arguments to ‘malloc’ that depend on a template parameter, so a declaration of ‘malloc’ must be available [-fpermissive]

[Andreas Tille]

Control: tags -1 help

Hi,

I need to admit that I have no idea why this error occures on arm64.

Any hint would be welcome

     Andreas.


On Sat, Dec 05, 2020 at 01:21:43PM +0100, Lucas Nussbaum wrote:
> Source: libhmsbeagle
> Version: 3.1.2+dfsg-8
> Severity: serious
> Justification: FTBFS on arm64
> Tags: bullseye sid ftbfs
> Usertags: ftbfs-20201205 ftbfs-bullseye
> 
> Hi,
> 
> During a rebuild of all packages in sid, your package failed to build
> on arm64 (I don't know if it also fails on amd64).
> 
> Relevant part (hopefully):
> > /bin/bash ../../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle  -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>> -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-arm64/include -I/usr/lib/jvm/java-11-openjdk-arm64/include/linux -O3 -std=c++11 -D FW_OPENCL -I/usr/include/CL/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libhmsbeagle_opencl_la-OpenCLPlugin.lo `test -f 'OpenCLPlugin.cpp' || echo './'`OpenCLPlugin.cpp
> > libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>> -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-arm64/include -I/usr/lib/jvm/java-11-openjdk-arm64/include/linux -O3 -std=c++11 -D FW_OPENCL -I/usr/include/CL/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c OpenCLPlugin.cpp  -fPIC -DPIC -o .libs/libhmsbeagle_opencl_la-OpenCLPlugin.o
> > In file included from /usr/include/CL/cl.h:20,
> >                  from /usr/include/CL/opencl.h:24,
> >                  from /<<PKGBUILDDIR>>/libhmsbeagle/GPU/GPUInterface.h:60,
> >                  from /<<PKGBUILDDIR>>/libhmsbeagle/GPU/BeagleGPUImpl.h:39,
> >                  from OpenCLPlugin.cpp:8:
> > /usr/include/CL/cl_version.h:22:104: note: ‘#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)’
> >    22 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 300 (OpenCL 3.0)")
> >       |                                                                                                        ^
> > In file included from /<<PKGBUILDDIR>>/libhmsbeagle/GPU/BeagleGPUImpl.h:39,
> >                  from OpenCLPlugin.cpp:8:
> > /<<PKGBUILDDIR>>/libhmsbeagle/GPU/GPUInterface.h: In member function ‘void opencl_device::GPUInterface::PrintfDeviceVector(GPUPtr, int, double, int*, Real)’:
> > /<<PKGBUILDDIR>>/libhmsbeagle/GPU/GPUInterface.h:221:27: error: there are no arguments to ‘malloc’ that depend on a template parameter, so a declaration of ‘malloc’ must be available [-fpermissive]
> >   221 |      Real* hPtr = (Real*) malloc(sizeof(Real) * length);
> >       |                           ^~~~~~
> > /<<PKGBUILDDIR>>/libhmsbeagle/GPU/GPUInterface.h:221:27: note: (if you use ‘-fpermissive’, G++ will accept your code, but allowing the use of an undeclared name is deprecated)
> > make[6]: *** [Makefile:701: libhmsbeagle_opencl_la-OpenCLPlugin.lo] Error 1
> 
> The full build log is available from:
>    http://qa-logs.debian.net/2020/12/05/libhmsbeagle_3.1.2+dfsg-8_unstable.log
> 
> A list of current common problems and possible solutions is available at
> http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
> 
> If you reassign this bug to another package, please marking it as 'affects'-ing
> this package. See https://www.debian.org/Bugs/server-control#affects
> 
> If you fail to reproduce this, please provide a build log and diff it with me
> so that we can identify if something relevant changed in the meantime.
> 
> About the archive rebuild: The rebuild was done on EC2 VM instances from
> Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
> failed build was retried once to eliminate random failures.
> 
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