[Debian-med-packaging] bedtools autopkgtest fails due to missing htsutil

Andreas Tille andreas at an3as.eu
Tue Dec 22 12:59:55 GMT 2020


Hi John,

your patch[1] makes use of a tool htsutil that is build from
htsutil.cpp.  Unfortunately this does not exist any more.  Thus the
autopkgtest of bedtools fails.  I wonder how we can fix this.  Simply
skipping those patches would be the only clue I have for the moment.

Kind regards

      Andreas.


[1] https://salsa.debian.org/med-team/bedtools/-/blob/master/debian/patches/no-samtools

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