[Debian-med-packaging] Bug#951072: ITP: htscodecs -- Custom compression for CRAM and others

Michael R. Crusoe michael.crusoe at gmail.com
Mon Feb 10 16:24:41 GMT 2020


Package: wnpp
Severity: wishlist

Subject: ITP: htscodecs -- Custom compression for CRAM and others
Package: wnpp
Owner: Michael R. Crusoe <michael.crusoe at gmail.com>
Severity: wishlist

* Package name    : htscodecs
  Version         : 0.5
  Upstream Author : , Genome Research Ltd.
* URL             : https://github.com/jkbonfield/htscodecs/
* License         : BSD-3-clause
  Programming Lang: C
  Description     : Custom compression for CRAM and others
 This library implements the custom CRAM codecs used for "EXTERNAL" block
 types. These consist of two variants of the rANS codec (8-bit and 16-bit
 renormalisation, with run-length encoding and bit-packing also supported
 in the latter), a dynamic arithmetic coder, and custom codecs for name/ID
 compression and quality score compression derived from fqzcomp.
 .
 They come with small command line test tools to act as both compression
 exploration programs and as part of the test harness.

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/htscodecs



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