[Debian-med-packaging] Bug#951072: ITP: htscodecs -- Custom compression for CRAM and others
Michael R. Crusoe
michael.crusoe at gmail.com
Mon Feb 10 16:24:41 GMT 2020
Package: wnpp
Severity: wishlist
Subject: ITP: htscodecs -- Custom compression for CRAM and others
Package: wnpp
Owner: Michael R. Crusoe <michael.crusoe at gmail.com>
Severity: wishlist
* Package name : htscodecs
Version : 0.5
Upstream Author : , Genome Research Ltd.
* URL : https://github.com/jkbonfield/htscodecs/
* License : BSD-3-clause
Programming Lang: C
Description : Custom compression for CRAM and others
This library implements the custom CRAM codecs used for "EXTERNAL" block
types. These consist of two variants of the rANS codec (8-bit and 16-bit
renormalisation, with run-length encoding and bit-packing also supported
in the latter), a dynamic arithmetic coder, and custom codecs for name/ID
compression and quality score compression derived from fqzcomp.
.
They come with small command line test tools to act as both compression
exploration programs and as part of the test harness.
Remark: This package is maintained by Debian Med Packaging Team at
https://salsa.debian.org/med-team/htscodecs
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