[Debian-med-packaging] Bug#952003: relion: FTBFS: src/mpi.cpp:56:23: error: call to ‘MPI_Errhandler_set’ declared with attribute error: MPI_Errhandler_set was removed in MPI-3.0. Use MPI_Comm_set_errhandler instead.

[Lucas Nussbaum]

Source: relion
Version: 1.4+dfsg-4
Severity: serious
Justification: FTBFS on amd64
Tags: buster sid
Usertags: ftbfs-20200222 ftbfs-buster

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.

Relevant part (hopefully):
> /bin/bash ./libtool  --tag=CXX   --mode=compile mpicxx.openmpi -DHAVE_CONFIG_H -I.   -Wdate-time -D_FORTIFY_SOURCE=2 -fpic  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/autopicker_mpi.lo src/autopicker_mpi.cpp
> libtool: compile:  mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker_mpi.cpp  -fPIC -DPIC -o src/.libs/autopicker_mpi.o
> src/mpi.cpp: In constructor ‘MpiNode::MpiNode(int&, char**)’:
> src/mpi.cpp:56:23: error: call to ‘MPI_Errhandler_set’ declared with attribute error: MPI_Errhandler_set was removed in MPI-3.0.  Use MPI_Comm_set_errhandler instead.
>    56 |     MPI_Errhandler_set(MPI_COMM_WORLD, MPI_ERRORS_RETURN);
>       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> make[3]: *** [Makefile:1305: src/mpi.lo] Error 1

The full build log is available from:
   http://qa-logs.debian.net/2020/02/22/relion_1.4+dfsg-4_unstable.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.